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gtgtgctatttatcttctttaatttgatatatgaagattggttagctaacctgaaaaggtttttttttctttctcatgctttctaatatttcagAGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTGCACTTGCCTTACGGAATGTACCAGAAGCAAATG
species | Oryza sativa |
transcript | LOC_Os06g30460.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGTTATACTGGATCCTTTGCTCGCTTTCAGGAATGAACTGAAAG AGCAACATGGGGTTAAAGTTTCAGEST: gi|218488261|gb|FG947096.1|FG947096
genomic: ATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAGgtgtgctatt ... aatatttcagAGCAACATGGGGTTAAAGTTTCAG
EST: ATGTTATACTGGATCCTTTGCTCGCTTTCAGGAATGAACTGAAAG AGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTGEST: gi|218481815|gb|FG945396.1|FG945396
genomic: ATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAGgtgtgctatt ... aatatttcagAGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTG
EST: ATGTTATACTGGATCCTTTGCTCGCTTTCAGGAATGAACTGAAAG AGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTGEST: gi|58692196|gb|CK080883.1|CK080883
genomic: ATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAGgtgtgctatt ... aatatttcagAGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTG
EST: ATGTTATACTGGATCCTTTGCTCGCTTTCAGGAATGAACTGAAAG AGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTGEST: gi|27578288|gb|CB000983.1|CB000983
genomic: ATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAGgtgtgctatt ... aatatttcagAGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTG
EST: ATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAG AGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTGEST: gi|27578255|gb|CB000950.1|CB000950
genomic: ATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAGgtgtgctatt ... aatatttcagAGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTG
EST: ATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAG AGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTGEST: gi|58678110|gb|CK066797.1|CK066797
genomic: ATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAGgtgtgctatt ... aatatttcagAGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTG
EST: ATGTTATACTGGATCCTTTGCTCGCTTTCAGGAATGAACTGAAAG AGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTGEST: gi|218482631|gb|FG947596.1|FG947596
genomic: ATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAGgtgtgctatt ... aatatttcagAGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTG
EST: ATGTTATACTGGATCCTTTGCTCGCTTTCAGGAATGAACTGAAAG AGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTG
genomic: ATGTTATACTGGATCCCTTGCTCGCTTTCAGGAATGAACTGAAAGgtgtgctatt ... aatatttcagAGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTG
ggttagctaacctgaaaaggtttttttttctttctcatgctttctaatatttcagAGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTGCACTTGCCTTACGGAATGTACCAGAAGCAAATG
ttctaat putative branch site (score: 2)
tttttttttctttctc CT-rich tract
aaaaggttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgctatttatcttctttaatttgatatatgaagattggttagctaacctgaaaaggtttttttttctttctcatgctttctaatatttcagAGCAACATGGGGTTAAAGTTTCAGTAAATGACATTGTCATAAAGGCTGTTGCACTTGCCTTACGGAATGTACCAGAAGCAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA