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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaccttcatgcatgtttggactcttcttttgttatatattgatttgttttcacttatatttgatcagaactattgaggttataactgacaaattatattttgtacattcctattcatctcctccgtctgcagTTTTTTCTAGAGCTTATGAAGGTGCCGAGGGTTGAATCTAAGTTTAGGATATTTGCTTTCAAGATTCAATTTCAATCACAG

Basic information

species Oryza sativa
transcript LOC_Os04g17130.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g17130.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G417410_T01 (Zea mays), 3'ss of exon 1
gtaaaccttcatgcatgtttggactcttcttttgttatatattgatttgttttcacttatatttgat-cagaactattgaggttataactgacaaattatattttgtacattcctattcatctcctccgtctgcagTTTTTTCTAGAGCTTATGAAGGTGCCGAGGGTTGAATCTAAGTTTAGGATATTTGCTTTCAAGATTCAATTTCAATCACAG
                                  |||||||| |  |   | |||  |     |  | || || |||| |   | |   |||   |   | |||  |  | |    ||  |  |  || ||||||||| ||||||||| | ||||||||||||||||||||||||||| ||  |||||| |||||||||||||| ||||| || |||
--------------------------------gtttatatatggggtgtgtgtcatatgggagtattgcataattatttaaaatct---tgatgtacc-tgtttccttgaattaccttgctgcctgccatctgcagTTCTTTCTAGAGTTGATGAAGGTGCCGAGGGTTGAATCTAAGCTTCAGATATTCGCTTTCAAGATTCAGTTTCAGTCTCAG

upper sequence: LOC_Os04g17130.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G398731_T01 (Zea mays), 3'ss of exon 4
--------------------------gtaaaccttc-atgcatgtttggactcttcttttgttatatattgatttgttttcacttatatttgatcagaactattgaggttataactgacaaattatattttgtacattcctattcatctcctccgtctgcagTTTTTTCTAGAGCTTATGAAGGTGCCGAGGGTTGAATCTAAGTTTAGGATATTTGCTTTCAAGATTCAATTTCAATCACAG
                           |||| |    || ||  | |  |   || ||||  ||  |||  |  ||| | |     ||||| || |  | ||   |  |  ||||| ||   || |  |      |||    ||  |  |   | ||||||||| ||||||||| | ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| ||||| || |||
gtaagcatccatattttgttttatagataaatcccggattcacatgtctatatttgtttt-ctaggtatacaaatgtatactggagtatttcataattatta--aaaatcttaacttacctgttttcctcca---atttaccttgctgcctgtcatctgcagTTCTTTCTAGAGTTAATGAAGGTGCCAAGGGTTGAATCTAAGCTTAAGATATTTGCTTTCAAGATTCAGTTTCAGTCTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttataactgacaaattatattttgtacattcctattcatctcctccgtctgcagTTTTTTCTAGAGCTTATGAAGGTGCCGAGGGTTGAATCTAAGTTTAGGATATTTGCTTTCAAGATTCAATTTCAATCACAG
     aactgac  putative branch site (score: 2)
                             ttcctattcatctcct  putative PPT
          acaaattatattttgt  TA-rich tract