1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctacttttcctctattttcttctccgtacttcacagaagtaaaataataatattctactcaaagtactgaaccttttgtcctttgtatttttttctatagGAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTACAATCCTCTTAAGTTGCCGATGGGTTGGGACGGCAAACCTATACCCTATT
species | Oryza sativa |
transcript | LOC_Os03g50850.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAG GAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTACEST: gi|4714942|gb|AU056059.1|AU056059
genomic: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAGgtaatctgca ... ttttctatagGAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTAC
EST: AGAAGAAGCTGACNCTCACATATGAAGANATGGAAGCAGAACGAGAAG-G GAAGAAGTGCAAGCTGNTAGTGAAAGTGATGATGAAGACCAACAAAATCTAEST: gi|29625135|gb|CB630146.1|CB630146
genomic: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAGgtaatctgca ... ttttctatagGAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAA-TCTA
EST: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAG GAGGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTACEST: gi|29664559|gb|CB660834.1|CB660834
genomic: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAGgtaatctgca ... ttttctatagGAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTAC
EST: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAG GAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTACEST: gi|29675683|gb|CB671958.1|CB671958
genomic: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAGgtaatctgca ... ttttctatagGAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTAC
EST: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAG GAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTACEST: gi|29664555|gb|CB660830.1|CB660830
genomic: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAGgtaatctgca ... ttttctatagGAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTAC
EST: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAG GAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTACEST: gi|218503878|gb|FG953739.1|FG953739
genomic: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAGgtaatctgca ... ttttctatagGAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTAC
EST: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAG GAGGAAGTGCAAGCTGEST: gi|29639904|gb|CB644913.1|CB644913
genomic: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAGgtaatctgca ... ttttctatagGAAGAAGTGCAAGCTG
EST: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAG GAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTAC
genomic: AGAAGAAGCTGACTCTCACATATGAAGAAATGGAAGCAGAACGAGAAGAGgtaatctgca ... ttttctatagGAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTAC
aataatattctactcaaagtactgaaccttttgtcctttgtatttttttctatagGAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTACAATCCTCTTAAGTTGCCGATGGGTTGGGACGGCAAACCTATACCCTATT
ccttttgtcctttgta CT-rich tract
tttgtatttttttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacttttcctctattttcttctccgtacttcacagaagtaaaataataatattctactcaaagtactgaaccttttgtcctttgtatttttttctatagGAAGAAGTGCAAGCTGATAGTGAAAGTGATGATGAAGACCAACAAATCTACAATCCTCTTAAGTTGCCGATGGGTTGGGACGGCAAACCTATACCCTATT
- - - - - - - - - - - - - - cttcaca
- - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - actcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgaa