1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatggactgttcatattttgtcacattcagataatcaatcaatcaaaaagaacatgttgctgagttatgaatcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGGTTCAGCATTGGAGTGGAGGATTTTGAGGATTTGAAGAATGACGTTGTT
species | Oryza sativa |
transcript | LOC_Os03g25940.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|89184572|gb|CI006997.1|CI006997
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|15855064|gb|BI807876.1|BI807876
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTT-GGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCACGAGAGAAATCTATGGAATCAAGGACAACTTGATCAEST: gi|88455535|gb|CI521755.1|CI521755
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCA-GAGAGAAATCTATGGAATCAAGGACAACTTGATCA
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTCCCATCATGTCTTAGTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|88254490|gb|CI353314.1|CI353314
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|29673041|gb|CB669316.1|CB669316
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|88903949|gb|CI006182.1|CI006182
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|89168537|gb|CI038891.1|CI038891
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|86530519|gb|CI170725.1|CI170725
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|29660677|gb|CB656952.1|CB656952
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|29686154|gb|CB682429.1|CB682429
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|12623045|gb|AU173258.1|AU173258
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATNTATGGAATCAAGGACAACTTGATCAGEST: gi|58585673|gb|CF983981.1|CF983981
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|117251720|gb|CT861201.1|CT861201
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|29625315|gb|CB630326.1|CB630326
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|29641911|gb|CB646918.1|CB646918
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|29639161|gb|CB644170.1|CB644170
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|88902302|gb|CI374910.1|CI374910
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|86413644|gb|CI019229.1|CI019229
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|29645225|gb|CB650232.1|CB650232
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|29614166|gb|CB619179.1|CB619179
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|2798534|gb|AA751828.1|AA751828
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|29614914|gb|CB619927.1|CB619927
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|29613257|gb|CB618270.1|CB618270
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|88998108|gb|CI037993.1|CI037993
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGEST: gi|38475493|gb|CF959626.1|CF959626
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
EST: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTG GGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
genomic: TTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactg ... atcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAG
ttcagataatcaatcaatcaaaaagaacatgttgctgagttatgaatcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGGTTCAGCATTGGAGTGGAGGATTTTGAGGATTTGAAGAATGACGTTGTT
ataatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggactgttcatattttgtcacattcagataatcaatcaatcaaaaagaacatgttgctgagttatgaatcattacagGGATTCAAAGGAGCAGAGAGAAATCTATGGAATCAAGGACAACTTGATCAGGTTCAGCATTGGAGTGGAGGATTTTGAGGATTTGAAGAATGACGTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA