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gtaaaactttgggctgaattacaccgtgcatgcttgaatttgagatgatacaaagccaaagctaatgctacactggttcctttcttcagGTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTCTCTGTTCAATGATCAGGCAGAGAGGATTGTTGGCTGCAGTGCAGATGAG
species | Oryza sativa |
transcript | LOC_Os03g11540.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAG GTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTCEST: gi|58681419|gb|CK070106.1|CK070106
genomic: GGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAGgtaaaacttt ... ctttcttcagGTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTC
EST: GGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAG GTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTCEST: gi|25806891|gb|CA762852.1|CA762852
genomic: GGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAGgtaaaacttt ... ctttcttcagGTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTC
EST: GCCAGAAGAATGATGCTGAGTGCTCACTGAG GTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTCEST: gi|66912695|gb|CX099543.1|CX099543
genomic: GCCAGAAGAATGATGCTGAGTGCTCACTGAGgtaaaacttt ... ctttcttcagGTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTC
EST: GGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAG GTACATCATGGTCATCAANGTCTCCGACCCTACTGGTGAGGCCTGGCTTTCEST: gi|58666112|gb|CK054798.1|CK054798
genomic: GGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAGgtaaaacttt ... ctttcttcagGTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTC
EST: GGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAG GTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTCEST: gi|163920065|gb|EG709847.1|EG709847
genomic: GGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAGgtaaaacttt ... ctttcttcagGTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTC
EST: GGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAG GTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTCEST: gi|86495835|gb|CI138468.1|CI138468
genomic: GGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAGgtaaaacttt ... ctttcttcagGTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTC
EST: GGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAG GTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTC
genomic: GGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAGgtaaaacttt ... ctttcttcagGTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTC
tgaatttgagatgatacaaagccaaagctaatgctacactggttcctttcttcagGTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTCTCTGTTCAATGATCAGGCAGAGAGGATTGTTGGCTGCAGTGCAGATGAG
agctaat putative branch site (score: 7)
ctggttcctttcttc putative PPT
atacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaactttgggctgaattacaccgtgcatgcttgaatttgagatgatacaaagccaaagctaatgctacactggttcctttcttcagGTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTCTCTGTTCAATGATCAGGCAGAGAGGATTGTTGGCTGCAGTGCAGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG