1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...actgcaagatcttgaaacttcttgatgattcaatccaaatgagtagcagctcaaccctcttacatgatgaaaaaatgtgttttattttattttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCCTCAAGATGTACATCATAGAGGACAAAGGGGGTGCCATTGCCCTCATGC
species | Oryza sativa |
transcript | LOC_Os12g31850.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTTCTCTGGAGGAGGAGCAGTTCATCCCTTTCTCTCCTTCTGACTTTAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|86821921|gb|CI309318.1|CI309318
genomic: G-TTCTCTGGAGGAGGAGCAGTTCATCCCTTTCTCTCCTTCTGACTTTAGgtaatgtgtt ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: AGTTCTCTGGAGGAGGAGCAGTTCATCCCTTTCTCTCCTTCTGACTTTAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCEST: gi|88315752|gb|CI617225.1|CI617225
genomic: AGTTCTCTGGAGGAGGAGCAGTTCATCCCTTTCTCTCCTTCTGACTTTAGgtaatgtgtt ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
EST: GTTCTCTTGGAGGAGGAGCAGTTCATCCCTTTCTCTCCTTCTGACTTTAG GTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
genomic: GTTCTC-TGGAGGAGGAGCAGTTCATCCCTTTCTCTCCTTCTGACTTTAGgtaatgtgtt ... tttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGC
gcagctcaaccctcttacatgatgaaaaaatgtgttttattttattttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCCTCAAGATGTACATCATAGAGGACAAAGGGGGTGCCATTGCCCTCATGC
ctcttac putative branch site (score: 34)
ttttattttatttttt putative PPT
ttacatgatgaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgcaagatcttgaaacttcttgatgattcaatccaaatgagtagcagctcaaccctcttacatgatgaaaaaatgtgttttattttattttttgtcagGTTTTTGAAGGCCCCCTTGTGAATTCCCTGTTGTCCATCAGACAAGGAGGCCTCAAGATGTACATCATAGAGGACAAAGGGGGTGCCATTGCCCTCATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
-ctgcaag
- - - - -tcttgaa
- - - - - - - - - - cttgatg
- - - - - - - - - - - - - - - -aatccaa
- - - - - - - - - - - - - - - - - - - - - -tagcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttt