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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacaagaacccgtgaaagttcagatctttgggcaaaaaatgttgtttttcttggacaaatcttgtgaaaaaagttgctgcttttttttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG

Basic information

species Oryza sativa
transcript LOC_Os11g28300.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33804188|gb|CF327969.1|CF327969
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88569792|gb|CI660967.1|CI660967
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|3766721|gb|AU030831.1|AU030831
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCNCCGCCACCGTG                         GCGGTCGCCGAGGACGG-GAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88337293|gb|CI629583.1|CI629583
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGNCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88307114|gb|CI640549.1|CI640549
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88307842|gb|CI646277.1|CI646277
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|58595287|gb|CF993595.1|CF993595
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88380713|gb|CI634738.1|CI634738
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|86898267|gb|CI290843.1|CI290843
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|8335723|gb|BE040531.1|BE040531
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88426536|gb|CI579365.1|CI579365
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88349790|gb|CI634325.1|CI634325
EST:     ACCCTAAACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88353912|gb|CI634703.1|CI634703
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88851485|gb|CI670925.1|CI670925
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88324987|gb|CI645001.1|CI645001
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88386892|gb|CI629219.1|CI629219
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88403187|gb|CI570928.1|CI570928
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTTTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|58587682|gb|CF985990.1|CF985990
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGA
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGA
EST: gi|88390701|gb|CI609326.1|CI609326
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88333978|gb|CI645392.1|CI645392
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|44678067|gb|CR291501.1|CR291501
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88415654|gb|CI591434.1|CI591434
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88401571|gb|CI588512.1|CI588512
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88311914|gb|CI577520.1|CI577520
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88307697|gb|CI644736.1|CI644736
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88335550|gb|CI642774.1|CI642774
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88723759|gb|CI747269.1|CI747269
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|218479784|gb|FG960708.1|FG960708
EST:     A-CCTATACTTCTCATCCTACTCGTCCTCCTCGCG-TCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88372059|gb|CI641694.1|CI641694
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|33677157|gb|CF305396.1|CF305396
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|66912648|gb|CX099496.1|CX099496
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|58589289|gb|CF987597.1|CF987597
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88348558|gb|CI634153.1|CI634153
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88413071|gb|CI578922.1|CI578922
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|42592205|gb|CK738691.1|CK738691
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88400467|gb|CI593542.1|CI593542
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGGGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88422996|gb|CI615296.1|CI615296
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|87023908|gb|CI288261.1|CI288261
EST:     CCCTAGACTTCTCAGTCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: CCCTAGACTTCTCA-TCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88340660|gb|CI647464.1|CI647464
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACTGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|33687017|gb|CF315256.1|CF315256
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88315632|gb|CI615504.1|CI615504
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: gi|88353597|gb|CI632988.1|CI632988
EST:     ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG                         GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 47 (upstream exon), 63 (downstream exon)
Score: 3

CAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttttcttggacaaatcttgtgaaaaaagttgctgcttttttttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG
                                ttgctgcttttttttt  CT-rich tract
                                       ttttttttttct  TA-rich tract