1 5' 3' | 2 5' 3' | 3 5' 3' |
...caatttttcttctgctatcactgctttctatatacgtatatgatcttaatcttaaaaatggtgctgctgattctgtaccatggttttctttcaatgacagGACAAGAGACATTGAAGTCACCCCAACAGAGCAATGCCACCTTCCTTTTTACCGTTAGATCAATGACTTCATTACCCCCACAG
species | Oryza sativa |
transcript | LOC_Os11g13490.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ttaatcttaaaaatggtgctgctgattctgtaccatggttttctttcaatgacagGACAAGAGACATTGAAGTCACCCCAACAGAGCAATGCCACCTTCCTTTTTACCGTTAGATCAATGACTTCATTACCCCCACAG
tgctgat putative branch site (score: 3)
ttttctttc putative PPT
ttaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatttttcttctgctatcactgctttctatatacgtatatgatcttaatcttaaaaatggtgctgctgattctgtaccatggttttctttcaatgacagGACAAGAGACATTGAAGTCACCCCAACAGAGCAATGCCACCTTCCTTTTTACCGTTAGATCAATGACTTCATTACCCCCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - -ttctgct
- - - - - - - - - - ctgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taccatg