1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cagacaatttattgtaagtacatcatttgtggtgtgcggtgtttaagttctggtaatcttgttgattgttgtactgttctttttccccccaaaaaaaaagGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAGGACCAGAGGCTTCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTG
species | Oryza sativa |
transcript | LOC_Os10g28350.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAG GATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAGEST: gi|88316332|gb|CI621571.1|CI621571
genomic: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGgtacacgatc ... aaaaaaaaagGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAG
EST: GCTCTTGCTTCCACCCCGCCAATCCACATGGAGAACGAATTCCAG GATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAGEST: gi|87004408|gb|CI298940.1|CI298940
genomic: GCTCTTGCTTCCACCCCG-CAATCCACATGGAGAACGAATTCCAGgtacacgatc ... aaaaaaaaagGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAG
EST: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAG GATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAGEST: gi|33693836|gb|CF322075.1|CF322075
genomic: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGgtacacgatc ... aaaaaaaaagGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAG
EST: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAG GATGGTAAGATGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAGEST: gi|88569799|gb|CI660974.1|CI660974
genomic: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGgtacacgatc ... aaaaaaaaagGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAG
EST: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAG GATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAGEST: gi|88352347|gb|CI615601.1|CI615601
genomic: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGgtacacgatc ... aaaaaaaaagGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAG
EST: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAG GATGGTAAGAGGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAGEST: gi|88340295|gb|CI652644.1|CI652644
genomic: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGgtacacgatc ... aaaaaaaaagGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAG
EST: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAG GATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAGEST: gi|88335605|gb|CI642829.1|CI642829
genomic: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGgtacacgatc ... aaaaaaaaagGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAG
EST: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAG GATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAGEST: gi|88401387|gb|CI585943.1|CI585943
genomic: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGgtacacgatc ... aaaaaaaaagGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAG
EST: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAG GATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAG
genomic: AGGTTCGCTCTTGCTTCCACCCCGCAATCCACATGGAGAACGAATTCCAGgtacacgatc ... aaaaaaaaagGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAG
agttctggtaatcttgttgattgttgtactgttctttttccccccaaaaaaaaagGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAGGACCAGAGGCTTCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTG
tgttgat putative branch site (score: 9)
ctgttctttttccccc putative PPT
aaaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagacaatttattgtaagtacatcatttgtggtgtgcggtgtttaagttctggtaatcttgttgattgttgtactgttctttttccccccaaaaaaaaagGATGGTAAGACGGAGGTGATAGAAGCATGGTACATGGATGATAGCGAAGAGGACCAGAGGCTTCCTCATCACCGCGAACCCAAAGAATTCATTCATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - -gtacatc
- - - - - - - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgttg