1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgattttgctttctttgcatcaaacattcattcaacaattcaatcagagaatgttaatttgttggcaccgatcaaaagaagaaaagagaacaactgtatatcgatcagagaattttgtttgtttgtttgtgaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGCGACAACTTCTTGGAGAACGGCCTCGCCGGCGTCGACGACATGGCGTTCC
species | Oryza sativa |
transcript | LOC_Os10g02750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAG ATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGCEST: gi|88572225|gb|CI663796.1|CI663796
genomic: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGgtgattttgc ... gaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
EST: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAG ATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGCEST: gi|88357935|gb|CI650671.1|CI650671
genomic: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGgtgattttgc ... gaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
EST: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAG ATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGCEST: gi|88309510|gb|CI655878.1|CI655878
genomic: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGgtgattttgc ... gaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
EST: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAG ATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGCEST: gi|88327657|gb|CI646240.1|CI646240
genomic: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGgtgattttgc ... gaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
EST: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAG ATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGCEST: gi|88308908|gb|CI654191.1|CI654191
genomic: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGgtgattttgc ... gaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
EST: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAG ATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
genomic: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGgtgattttgc ... gaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
gagaacaactgtatatcgatcagagaattttgtttgtttgtttgtgaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGCGACAACTTCTTGGAGAACGGCCTCGCCGGCGTCGACGACATGGCGTTCC
aattttgtttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattttgctttctttgcatcaaacattcattcaacaattcaatcagagaatgttaatttgttggcaccgatcaaaagaagaaaagagaacaactgtatatcgatcagagaattttgtttgtttgtttgtgaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGCGACAACTTCTTGGAGAACGGCCTCGCCGGCGTCGACGACATGGCGTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA