1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgtgccctagattgttagtatttagttatgggcgaactatatatgttcctttatttcgtttttccataaacatagccatttgtgtttttgaaacttgcagCATGACCAGAACTTTGGAAAGATACCAAAAATTCAGTTATGGTGGGCCAGATACTGCAATACAGAACAAGGAAAATGAG
species | Oryza sativa |
transcript | LOC_Os09g32948.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCGGCCAAAG CATGACCAGAACTTTGGAAAGATACCAAAAATTCAGTTATGGTGGGCCAGAEST: gi|66947293|gb|AU312137.1|AU312137
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCGGCCAAAGgtatatatac ... aaacttgcagCATGACCAGAACTTTGGAAAGATACCAAAAATTCAGTTATGGTGGGCCAGA
EST: TCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCGGCCAAAG CATGACCAGAACTTTGGAAAGATACCAAAAATTCAGTTATGGTGGGCCAGAEST: gi|55408198|gb|CV720574.1|CV720574
genomic: TCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCGGCCAAAGgtatatatac ... aaacttgcagCATGACCAGAACTTTGGAAAGATACCAAAAATTCAGTTATGGTGGGCCAGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCGGCCAAAG CATGACCAGAACTTTGGAAAGATACCAAAAATTCAGTTATGGTGGGCCAGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCGGCCAAAGgtatatatac ... aaacttgcagCATGACCAGAACTTTGGAAAGATACCAAAAATTCAGTTATGGTGGGCCAGA
ttcctttatttcgtttttccataaacatagccatttgtgtttttgaaacttgcagCATGACCAGAACTTTGGAAAGATACCAAAAATTCAGTTATGGTGGGCCAGATACTGCAATACAGAACAAGGAAAATGAG
ataaacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgccctagattgttagtatttagttatgggcgaactatatatgttcctttatttcgtttttccataaacatagccatttgtgtttttgaaacttgcagCATGACCAGAACTTTGGAAAGATACCAAAAATTCAGTTATGGTGGGCCAGATACTGCAATACAGAACAAGGAAAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- tgcccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgtt