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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtcccggacttgatccgcaacgtggtgggcatcgtcggcaatgtcatctcctttggcctcttcctctcgccggtgcccaccttctggcggatcatcaagaataaggacgtgcgggacttcaaggcggaccagtacctagccacgctgctcaattgcatgctctagGTTTTCTATGGTCTTCCCATCGTTCACCCCAACAGCATTCTCGTCGTCACCATCAACGGTATTGGCCTCGTCATCGAGGCCGTCTACCTCACCATCTTCT

Basic information

species Oryza sativa
transcript LOC_Os09g08490.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g08490.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G157675_T02 (Zea mays), 3'ss of exon 1
----------------------------------------------------gtgtcccggacttgatccgcaacgtggtgggcatcgtcgg--caatgtcatctcctttggcctcttcctctcgccggtgcccaccttctggcggatcatcaagaataaggacgtgcgggacttcaaggcggaccagtacctagccacgctgctcaattgcatgctctagGTTTTCTATGGTCTTCCCATCGTTCACCCCAACAGCATTCTCGTCGTCACCATCAACGGTATTGGCCTCGTCATCGAGGCCGTCTACCTCACCATCTTCT
                                                     ||    ||  ||  |  | |  |   |  | |  | ||   |   | |  |  || ||  |||     |  |     ||  || ||||||||||||  ||||   |||||||||  ||| |||||| ||||||  ||||| || ||||||||||| |||||||||| ||| ||||||                                                                                           
gtaggcactcatcgatcggtccgggttcatctgggtggtttttttttttgatttggttagggttttgtttgtactgatatatggagaggcgcgccgccgcctgcatctgtgttctcgcgtgcctgtgcagGCTGACGTTCTGGCGGATCTACAAGGCCAAGGACGTGGAGGAGTTCAAGCCGGACCCTTACCTGGCGACGCTGCTCAACTGCATGCTCTGGGTGTTCTAT-------------------------------------------------------------------------------------------

upper sequence: LOC_Os09g08490.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G416965_T01 (Zea mays), 3'ss of exon 1
gtgtcccggacttgatccgcaacgtggtgggcatcgtcggcaatgtcatctcctttggcctcttcctctcgccggtgcccaccttctggcggatcatcaagaataaggacgtgcgggacttcaaggcggaccagt-acctagccacgctgctcaattgcatgctctagGTTTTCTATGGTCTTCCCATCGTTCACCCCAACAGCATTCTCGTCGTCACCATCAACGGTATTGGCCTCGTCATCGAGGCCGTCTACCTCACCATCTTCT
                                                       |    |  | |  ||| ||| || | | |    |    ||||   | ||   |  ||   ||  ||  |     |  |   |  | ||   ||  ||| || |  |||||  | ||   |||  |||  |  | |||     |||   |||   | | | |  | ||  |      |                                    
------------------------------------------------------gtacgttggttcaatcggcggcgcgcgcgt----ggaactcattctggatcgagcggttttgg--tttgatatatatgatcgatttcgctgggcgtctcgatcgggtgctcacgcttggttattttctcgctttggttgcagGCAATGTCATCTCCTTTGGCCTCTTCCTCTCCCCAGT-----------------------------------

upper sequence: LOC_Os09g08490.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G157675_T01 (Zea mays), 3'ss of exon 1
gtgtcccggacttgatccgcaacgtggtgggcatcgtcggcaatgtcatctcctttggcctcttcctctcgccggtgcccaccttctggcggatcatcaagaataaggacgtgcgggacttcaaggcggaccagtacctagcca-cgctgctcaattgcatgctctagGTTTTCTATGGTCTTCCCATCGTTCACCCCAACAGCATTCTCGTCGTCACCATCAACGGTATTGGCCTCGTCATCGAGGCCGTCTACCTCACCATCTTCT----------
                                                                                        |    |    | ||     | ||   || | |       | ||    | |  ||   ||    |   || | | |  | | |||     ||| |  |  |||     | |||| ||   | ||| || |  ||     |  ||||  ||     | | | | ||| | ||  | |||||           
----------------------------------------------------------------------------------------gtacgtacgtacgataggcgccgcctggaagtctg----gaactcagatcgggctgtcgggttttggtttcgttcgatcgatttcgctgggtgtctctctcggggtgctcaactgctcacgcgtggtta--atttctcgctttggtttca--gGCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGT