1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtcagtacactcaattcttcttgctcatcgatcaccaatccttctcgctcaaaccccccaagctcttctcttcctaactcttgcctctgcacccgcagGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCCCACCGCGCGCAAGGAGTGCTATGGCGTCTTCTGCACCACCTACGACCTC
species | Oryza sativa |
transcript | LOC_Os08g44810.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAA GCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCCEST: gi|58606317|gb|CK034350.1|CK034350
genomic: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAAgtcagtacac ... gcacccgcagGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCC
EST: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAA GCAGGCTCAGGCTCAGGGCCCGCCCGGGGCGGTCGCGGCGGAGGAGGCGCCEST: gi|87011328|gb|CI289598.1|CI289598
genomic: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAAgtcagtacac ... gcacccgcagGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCC
EST: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAA GCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCCEST: gi|30227408|gb|CB965300.1|CB965300
genomic: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAAgtcagtacac ... gcacccgcagGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCC
EST: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAA GCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCCEST: gi|30227998|gb|CB965890.1|CB965890
genomic: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAAgtcagtacac ... gcacccgcagGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCC
EST: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAA GCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCCEST: gi|38474368|gb|CF958500.1|CF958500
genomic: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAAgtcagtacac ... gcacccgcagGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCC
EST: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGAGGCCGCGCCAAA GCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCCEST: gi|117251104|gb|CT844032.1|CT844032
genomic: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAAgtcagtacac ... gcacccgcagGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCC
EST: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAA GCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCCEST: gi|29686257|gb|CB682532.1|CB682532
genomic: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAAgtcagtacac ... gcacccgcagGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCC
EST: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAA GCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCCEST: gi|29677717|gb|CB673992.1|CB673992
genomic: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAAgtcagtacac ... gcacccgcagGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCC
EST: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAA GCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCCEST: gi|58610947|gb|CK038659.1|CK038659
genomic: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAAgtcagtacac ... gcacccgcagGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCC
EST: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAA GCAGGCTCAGGCTCAGGGCCCGCCCGCGGGGGTCGCGGCGGAGGAGGCGCC
genomic: CGACGCCCGCGCCGACCCACCCTCCGCTGCTCCCTCGACGCCGCGCCAAAgtcagtacac ... gcacccgcagGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCC
ctcgctcaaaccccccaagctcttctcttcctaactcttgcctctgcacccgcagGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCCCACCGCGCGCAAGGAGTGCTATGGCGTCTTCTGCACCACCTACGACCTC
tcctaac putative branch site (score: 3)
ctcttctcttcctaac CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtacactcaattcttcttgctcatcgatcaccaatccttctcgctcaaaccccccaagctcttctcttcctaactcttgcctctgcacccgcagGCAGGCTCAGGCTCAGGGCCCGCCCGCGGCGGTCGCGGCGGAGGAGGCGCCCACCGCGCGCAAGGAGTGCTATGGCGTCTTCTGCACCACCTACGACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG