1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgcccctattgtagatcttaatcatcgttaatctctccttcttgtgatcccatgcatgcactaattttaattaattcctcatgtcttttgaactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAAACAGCTGTCCAAAATAGAGAAAGTGAG
species | Oryza sativa |
transcript | LOC_Os08g41950.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88401388|gb|CI585944.1|CI585944
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88722826|gb|CI746336.1|CI746336
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGNAAGCTCTACGAGTTCTGGAGCACCCAGAG CATGAGTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|58663584|gb|CK052270.1|CK052270
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88720377|gb|CI743676.1|CI743676
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88694062|gb|CI738100.1|CI738100
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGANTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88721563|gb|CI744862.1|CI744862
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTANGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88696368|gb|CI739943.1|CI739943
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88984144|gb|CI723700.1|CI723700
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAANGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88694250|gb|CI738288.1|CI738288
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88355319|gb|CI679024.1|CI679024
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|58601238|gb|CK011766.1|CK011766
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACEST: gi|88722944|gb|CI746454.1|CI746454
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGAC
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88725198|gb|CI748457.1|CI748457
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGNAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|40491399|gb|BX901494.1|BX901494
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88719988|gb|CI745287.1|CI745287
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88671413|gb|CI725529.1|CI725529
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88694823|gb|CI738861.1|CI738861
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|163926627|gb|EG713643.1|EG713643
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|58685642|gb|CK074329.1|CK074329
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAEST: gi|88687916|gb|CI731492.1|CI731492
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88724225|gb|CI747484.1|CI747484
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|24208827|gb|AU225854.1|AU225854
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88722014|gb|CI745417.1|CI745417
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88461647|gb|CI695489.1|CI695489
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88730563|gb|CI754176.1|CI754176
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88726869|gb|CI750524.1|CI750524
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTAGCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88718586|gb|CI742096.1|CI742096
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88904617|gb|CI711916.1|CI711916
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88718424|gb|CI741934.1|CI741934
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGNGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88581317|gb|CI698295.1|CI698295
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88720603|gb|CI743902.1|CI743902
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAANGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|66932169|gb|CX119017.1|CX119017
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88313445|gb|CI671563.1|CI671563
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88728398|gb|CI751908.1|CI751908
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88338971|gb|CI677788.1|CI677788
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88581413|gb|CI698397.1|CI698397
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAEST: gi|88695657|gb|CI737695.1|CI737695
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
EST: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAG CATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttca ... aactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGA
gatcccatgcatgcactaattttaattaattcctcatgtcttttgaactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAAACAGCTGTCCAAAATAGAGAAAGTGAG
atgcactaattttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcccctattgtagatcttaatcatcgttaatctctccttcttgtgatcccatgcatgcactaattttaattaattcctcatgtcttttgaactttgtagCATGACTAAAACGCTTGAGAAGTATCAGAAATGCAGTTACGCAGGACCCGAAACAGCTGTCCAAAATAGAGAAAGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
tgcccct
- - - - - - - - - - - - - - - - - ctccttc
- - - - - - - - - - - - - - - - - - - - -ttgtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgc