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...aaaaaaaatactaggagaggtttttttttaattcagtcatgctaatgttgtcatgttaatgcttaatcgttgctttttatttaatattttttttcgtcagGCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCAACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAG
species | Oryza sativa |
transcript | LOC_Os08g41460.6 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGGAAGCAGCGTTGTGATGNTAA GCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCAEST: gi|58595312|gb|CF993620.1|CF993620
genomic: AAGGAAGCAGCGTTGTGATGCTAAgtaagtggta ... ttttcgtcagGCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCA
EST: TAACCTCAAGGAGGAGCTTATGTGGGAAGGAAGCAGCGTTGTGATGCTAA GCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCAEST: gi|29684942|gb|CB681217.1|CB681217
genomic: TAACCTCAAGGAGGAGCTTATGTGGGAAGGAAGCAGCGTTGTGATGCTAAgtaagtggta ... ttttcgtcagGCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCA
EST: TGTGGGAAGGAAGCAGCGTTGTGATGCTAA GCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCAEST: gi|38474705|gb|CF958838.1|CF958838
genomic: TGTGGGAAGGAAGCAGCGTTGTGATGCTAAgtaagtggta ... ttttcgtcagGCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCA
EST: TAACCTCAAGGAGGAGCTTATGTGGGAAGGAAGCAGCGTTGTGATGCTAA GCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCAEST: gi|29683115|gb|CB679390.1|CB679390
genomic: TAACCTCAAGGAGGAGCTTATGTGGGAAGGAAGCAGCGTTGTGATGCTAAgtaagtggta ... ttttcgtcagGCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCA
EST: GCGTTGTGATGCTCT TCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCAEST: gi|29663222|gb|CB659497.1|CB659497
genomic: GCGTTGTGATGCTAAgtaagtggta ... ttttcgtcagGCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCA
EST: TGTGGGAAGGAAGCAGCGTTGTGATGCTAA GCCTTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCAEST: gi|163920678|gb|EG710011.1|EG710011
genomic: TGTGGGAAGGAAGCAGCGTTGTGATGCTAAgtaagtggta ... ttttcgtcagGCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCA
EST: TAACCTCAAGGAGGAGCTTATGTGGGAAGGAAGCAGCGTTGTGATGCTAA GCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCA
genomic: TAACCTCAAGGAGGAGCTTATGTGGGAAGGAAGCAGCGTTGTGATGCTAAgtaagtggta ... ttttcgtcagGCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCA
tgttgtcatgttaatgcttaatcgttgctttttatttaatattttttttcgtcagGCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCAACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAG
tattttttttcgtc CT-rich tract
ttaatcgttgcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaaaatactaggagaggtttttttttaattcagtcatgctaatgttgtcatgttaatgcttaatcgttgctttttatttaatattttttttcgtcagGCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCAACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA