1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcgtagaattaggttaggttggatttggacctgttgcttgtcgatcagccatgggatctcgccgcaaaagctcacgcttgcggtgtttgtttgtttacagGTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACG
species | Oryza sativa |
transcript | LOC_Os08g41010.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCGCCGCCGGTTTCAGTAGCAGCCACCCCCACCACCATGTCTTCTCAG GTCGACAACCGTAGGCGATCTGCTGGAAAGCGTGCCCGCACCGACGEST: gi|88358394|gb|CI606903.1|CI606903
genomic: CCCCGCCGCCGGTTTCAGCAGCAGCCACCCCCACCACCATGTCTTCTCAGgtacacgggt ... ttgtttacagGTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACG
EST: CCCCGCCGCCGGTTTCAGCAGCAGCCACCCCCACCACCATGTCTTCTCAG GTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGEST: gi|88724063|gb|CI749073.1|CI749073
genomic: CCCCGCCGCCGGTTTCAGCAGCAGCCACCCCCACCACCATGTCTTCTCAGgtacacgggt ... ttgtttacagGTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACG
EST: CCCCGCCGCCGGTTTCAGCAGCAGCCACCCCCACCACCATGTCTTCTCAG GTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACG
genomic: CCCCGCCGCCGGTTTCAGCAGCAGCCACCCCCACCACCATGTCTTCTCAGgtacacgggt ... ttgtttacagGTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACG
cagccatgggatctcgccgcaaaagctcacgcttgcggtgtttgtttgtttacagGTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACG
agctcac putative branch site (score: 3)
tttgttt putative PPT
tttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgtagaattaggttaggttggatttggacctgttgcttgtcgatcagccatgggatctcgccgcaaaagctcacgcttgcggtgtttgtttgtttacagGTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA