1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgcattttctcttgatttgcagcatgcgttttctcaatgctgttaatttctgaggtcccgtattatgtttctaaaagtttctctcttttgacactgcagGAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA
species | Oryza sativa |
transcript | LOC_Os08g37320.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGCACCTTCGAGGACGTCAACCACCAGCTCCAGACCAAGTTCTCTCAG GAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAAEST: gi|163925925|gb|EG714977.1|EG714977
genomic: GCCGCACCTTCGAGGACGTCAACCACCAGCTCCAGACCAAGTTCTCTCAGgtattcacca ... gacactgcagGAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAA
EST: GCCGCACCTTCGAGGACGTCAACCACCAGCTCCAGACCAAGTTCTCTCAG GAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAAEST: gi|58669670|gb|CK058356.1|CK058356
genomic: GCCGCACCTTCGAGGACGTCAACCACCAGCTCCAGACCAAGTTCTCTCAGgtattcacca ... gacactgcagGAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAA
EST: GCCGCACCTTCGAGGACGTCAACCACCAGCTCCAGACCAAGTTCTCTCAG GAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAAEST: gi|58603329|gb|CK013857.1|CK013857
genomic: GCCGCACCTTCGAGGACGTCAACCACCAGCTCCAGACCAAGTTCTCTCAGgtattcacca ... gacactgcagGAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAA
EST: GCCGCACCTTCGAGGACGTCAAACACCAGCTCCAGACCAAGTTCTCTCAG GAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAAEST: gi|163920020|gb|EG709826.1|EG709826
genomic: GCCGCACCTTCGAGGACGTCAACCACCAGCTCCAGACCAAGTTCTCTCAGgtattcacca ... gacactgcagGAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAA
EST: GCCGCACCTTCGAGGACGTCAACCACCAGCTCCAGACCAAGTTCTCTCAG GAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAAEST: gi|32947994|gb|BP184566.1|BP184566
genomic: GCCGCACCTTCGAGGACGTCAACCACCAGCTCCAGACCAAGTTCTCTCAGgtattcacca ... gacactgcagGAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAA
EST: GCCGCACCTTCGAGGACGTCAACCACCAGCTCCAGACCAAGTTCTCTCAG GAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAAEST: gi|163920610|gb|EG711789.1|EG711789
genomic: GCCGCACCTTCGAGGACGTCAACCACCAGCTCCAGACCAAGTTCTCTCAGgtattcacca ... gacactgcagGAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAA
EST: GCCGCACCTTCGAGGACGTCAACCACCAGCTCCAGACCAAGTTCTCTCAG GAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAA
genomic: GCCGCACCTTCGAGGACGTCAACCACCAGCTCCAGACCAAGTTCTCTCAGgtattcacca ... gacactgcagGAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAA
aatttctgaggtcccgtattatgtttctaaaagtttctctcttttgacactgcagGAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA
tttctctcttttgac CT-rich tract
tattatgtttctaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcattttctcttgatttgcagcatgcgttttctcaatgctgttaatttctgaggtcccgtattatgtttctaaaagtttctctcttttgacactgcagGAGCCCCAACCGATTGACTGGGAGTACTACAGAAAAGGAATTGGGTCTAAAGTTGTAGATATGTACAAGGAAGCTTATGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
atgcatt
- - - - - - - - - - -agcatgc
- - - - - - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - -tttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttct