1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...gttgcgttgtaaattttgcttgagtatttctacctgcttaatttcatgcacagcttgctgggtctaaatggcatctatcgtttgatacttttaattgtagAACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAGCTCAATGTTGATTTCCGGAGCATCAAAG
species | Oryza sativa |
transcript | LOC_Os08g25060.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATG AACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAGEST: gi|88588826|gb|CI706668.1|CI706668
genomic: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATGgtgcgtcgcg ... ttaattgtagAACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAG
EST: AGTACAAGACCACGCTCAAGGACCCCGGCACCACGGGCGTCCTGCGCATG AACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAGEST: gi|88207963|gb|CI207812.1|CI207812
genomic: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATGgtgcgtcgcg ... ttaattgtagAACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAG
EST: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATG AACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAGEST: gi|5004205|gb|AU069354.1|AU069354
genomic: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATGgtgcgtcgcg ... ttaattgtagAACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAG
EST: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATG AACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAGEST: gi|13919362|gb|AU183605.1|AU183605
genomic: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATGgtgcgtcgcg ... ttaattgtagAACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAG
EST: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATG AACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAGEST: gi|29631299|gb|CB636308.1|CB636308
genomic: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATGgtgcgtcgcg ... ttaattgtagAACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAG
EST: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATG AACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAGEST: gi|33678004|gb|CF306243.1|CF306243
genomic: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATGgtgcgtcgcg ... ttaattgtagAACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAG
EST: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATG AACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAGEST: gi|88369471|gb|CI580493.1|CI580493
genomic: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATGgtgcgtcgcg ... ttaattgtagAACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAG
EST: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATG AACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAG
genomic: AGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATGgtgcgtcgcg ... ttaattgtagAACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAG
atgcacagcttgctgggtctaaatggcatctatcgtttgatacttttaattgtagAACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAGCTCAATGTTGATTTCCGGAGCATCAAAG
ttttaat putative branch site (score: 14)
tactttt CT-rich tract
tttgatacttttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgcgttgtaaattttgcttgagtatttctacctgcttaatttcatgcacagcttgctgggtctaaatggcatctatcgtttgatacttttaattgtagAACGAGGATAAGTTCACCTTCACTCCCCATGATCCACGGTCAGCGATGAAGCTCAATGTTGATTTCCGGAGCATCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - -ttgcttg
- - - - - - - - - - - - - - - - cctgctt
- - - - - - - - - - - - - - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -cttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatact