1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aggcttgctctatgtaaagtatgatcttcatgggtttttgttctttgttatgctcatgacatgaccctgaaaggctcaaatactgtactcctttaaatagGATGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGCAAAATTCCTTGAGAGAAAGCTTCAGCAGCCTGATGGGCTGGAATCTCTG
species | Oryza sativa |
transcript | LOC_Os07g47340.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGTTCGCGCCGCTTCCAGCGCCTACTGCCCCTTCCCGCCCCCAGCCCAG GATGGCTCATCCTGGAGGACCACTAACTACAAACAATGCTGCTGCTTTAGCEST: gi|88411770|gb|CI571262.1|CI571262
genomic: AAGTTCGCGCCGCTTCCAGCGCCTACTGCCCCTTCCCGCCCCCAGCCCAGgtgtcgtatc ... ctttaaatagGATGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGC
EST: AAGTTCGCGCCGCTTCCAGCGCCTACTGCCCCTTCCCGCCCCCAGCCCAG GATGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGCEST: gi|88394076|gb|CI684746.1|CI684746
genomic: AAGTTCGCGCCGCTTCCAGCGCCTACTGCCCCTTCCCGCCCCCAGCCCAGgtgtcgtatc ... ctttaaatagGATGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGC
EST: AAGTTCGCGCCGCTTCCAGCGCCTACTGCCCCTTCCCGCCCCCAGCCCAG GATGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGCEST: gi|88376794|gb|CI639119.1|CI639119
genomic: AAGTTCGCGCCGCTTCCAGCGCCTACTGCCCCTTCCCGCCCCCAGCCCAGgtgtcgtatc ... ctttaaatagGATGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGC
EST: AAGTTCGCGCCGCTTCCAGCGCCTACTGCCCCTTCCCGCCCCCAGCCCAG GATGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGCEST: gi|88852165|gb|CI683683.1|CI683683
genomic: AAGTTCGCGCCGCTTCCAGCGCCTACTGCCCCTTCCCGCCCCCAGCCCAGgtgtcgtatc ... ctttaaatagGATGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGC
EST: AAGTTCGCGCCGCTTCCAGCGCCTACTGCCCCTTCCCGCCCCCAGCCCAG GATGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGC
genomic: AAGTTCGCGCCGCTTCCAGCGCCTACTGCCCCTTCCCGCCCCCAGCCCAGgtgtcgtatc ... ctttaaatagGATGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGC
tgttatgctcatgacatgaccctgaaaggctcaaatactgtactcctttaaatagGATGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGCAAAATTCCTTGAGAGAAAGCTTCAGCAGCCTGATGGGCTGGAATCTCTG
tactccttt CT-rich tract
tttaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggcttgctctatgtaaagtatgatcttcatgggtttttgttctttgttatgctcatgacatgaccctgaaaggctcaaatactgtactcctttaaatagGATGGCTCATCCTGGAGGACCACTAACTACAAACAAGGCTGCTGCTTTAGCAAAATTCCTTGAGAGAAAGCTTCAGCAGCCTGATGGGCTGGAATCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
-ggcttgc
- - - - - - - - - - - - -cttcatg
- - - - - - - - - - - - - - - - -gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - -gctcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaatac