1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tatacatttcccttatcattcggtccatattgttaaccagaatatgaaaaatgctgattgaaatcattaagctgcaattctcattccccatgtttttcagGTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTGCATAAATGAAGCTTGCTGAATGTAGATTGTGAAGTTCTCCTTTCCTGCG
species | Oryza sativa |
transcript | LOC_Os06g48700.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAG GTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTGEST: gi|88723061|gb|CI746571.1|CI746571
genomic: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAGgtgataagag ... tgtttttcagGTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTG
EST: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAG GTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTGEST: gi|88405287|gb|CI586108.1|CI586108
genomic: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAGgtgataagag ... tgtttttcagGTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTG
EST: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAG GTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTGEST: gi|58661889|gb|CK050569.1|CK050569
genomic: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAGgtgataagag ... tgtttttcagGTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTG
EST: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAG GTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTGEST: gi|88306441|gb|CI638228.1|CI638228
genomic: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAGgtgataagag ... tgtttttcagGTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTG
EST: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAG GTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTGEST: gi|58603407|gb|CK013935.1|CK013935
genomic: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAGgtgataagag ... tgtttttcagGTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTG
EST: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAG GTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTGEST: gi|58680675|gb|CK069362.1|CK069362
genomic: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAGgtgataagag ... tgtttttcagGTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTG
EST: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAG GTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTGEST: gi|58665804|gb|CK054490.1|CK054490
genomic: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAGgtgataagag ... tgtttttcagGTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTG
EST: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAG GTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTGEST: gi|88294769|gb|CI604641.1|CI604641
genomic: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAGgtgataagag ... tgtttttcagGTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTG
EST: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAG GTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTG
genomic: AACTCGGTAATCCCAAGCCCTGGGTGAGTGAGATCCAGCTTCGCAAGAAGgtgataagag ... tgtttttcagGTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTG
gaaaaatgctgattgaaatcattaagctgcaattctcattccccatgtttttcagGTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTGCATAAATGAAGCTTGCTGAATGTAGATTGTGAAGTTCTCCTTTCCTGCG
tgctgat putative branch site (score: 20)
ttctcattccccatgt putative PPT
attgaaatcattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatacatttcccttatcattcggtccatattgttaaccagaatatgaaaaatgctgattgaaatcattaagctgcaattctcattccccatgtttttcagGTTTTGGGGGTTCTTGGGCAGTTCTGCCAGGAGAGTGACACTGGATGATTGCATAAATGAAGCTTGCTGAATGTAGATTGTGAAGTTCTCCTTTCCTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - -accagaa
- - - - - - - - - - - - - - - - - - - - - -atgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctgca