1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggtgtttgatattttcctgtgaccttaagaagagatgctgttctcatgttcgtgtgcatgatattattctcactgagtgcttcactgtactgttttgcagTTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGGTCAACAGATTCCAGCCAGTGACAAGATATATGAATACATACTATTTAGAGGAAGTGATATAAA
species | Oryza sativa |
transcript | LOC_Os06g30060.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACG TTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGTTCAACAGATTCCAGEST: gi|58672585|gb|CK061271.1|CK061271
genomic: CGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACGgttaggctcc ... tgttttgcagTTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGGTCAACAGATTCCAG
EST: CGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACG TTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGTTCAACAGATTCCAGEST: gi|29623763|gb|CB628774.1|CB628774
genomic: CGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACGgttaggctcc ... tgttttgcagTTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGGTCAACAGATTCCAG
EST: CGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACG TTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGTTCAACAGATTCCAGEST: gi|29636795|gb|CB641804.1|CB641804
genomic: CGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACGgttaggctcc ... tgttttgcagTTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGGTCAACAGATTCCAG
EST: CGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACG TTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGGTCAACAGATTCCAGEST: gi|58667348|gb|CK056034.1|CK056034
genomic: CGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACGgttaggctcc ... tgttttgcagTTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGGTCAACAGATTCCAG
EST: CGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACG TTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGTTCAACAGATTCCAGEST: gi|117231418|gb|CT846842.1|CT846842
genomic: CGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACGgttaggctcc ... tgttttgcagTTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGGTCAACAGATTCCAG
EST: CGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACG TTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGTTCAACAGATTCCAGEST: gi|58601474|gb|CK012002.1|CK012002
genomic: CGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACGgttaggctcc ... tgttttgcagTTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGGTCAACAGATTCCAG
EST: CGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACG TTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGTTCAACAGATTCCAG
genomic: CGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACGgttaggctcc ... tgttttgcagTTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGGTCAACAGATTCCAG
atgttcgtgtgcatgatattattctcactgagtgcttcactgtactgttttgcagTTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGGTCAACAGATTCCAGCCAGTGACAAGATATATGAATACATACTATTTAGAGGAAGTGATATAAA
ttctcac putative branch site (score: 2)
ctgtttt putative PPT
atgatattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgtttgatattttcctgtgaccttaagaagagatgctgttctcatgttcgtgtgcatgatattattctcactgagtgcttcactgtactgttttgcagTTCGCTCATTTGGAACTGAAGGTCGTAAGAAGGATGGTCAACAGATTCCAGCCAGTGACAAGATATATGAATACATACTATTTAGAGGAAGTGATATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA