1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaatagcatgtgcatgcaaatgttttatgtatgcctgcaaaataagttttatggttcaaattgtttttaatccgagtgttgatcattttatgttctccagGTGCTTAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAACGATAAAGTCACAAAGGCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGA
species | Oryza sativa |
transcript | LOC_Os05g23740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTGTCCCGCCATTGGCAAGCAGTTCGCCGCCGAGGAGATCTCCGCCCAG GTGCTTAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAACGATAAAGTCEST: gi|29675790|gb|CB672065.1|CB672065
genomic: ACTGTCCCGCCATTGGCAAGCAGTTCGCCGCCGAGGAGATCTCCGCCCAGgtataggggt ... tgttctccagGTGCTTAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAACGATAAAGTC
EST: ACTGTCCCGCCATTGGCAAGCAGTTCGCCGCCGAGGAGATCTCCGCCCAG GTGCTTAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAACGATAAAGTCEST: gi|29621771|gb|CB626782.1|CB626782
genomic: ACTGTCCCGCCATTGGCAAGCAGTTCGCCGCCGAGGAGATCTCCGCCCAGgtataggggt ... tgttctccagGTGCTTAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAACGATAAAGTC
EST: ACTGTCCCGCCATTGGCAAGCAGTTCGCCGCCGAGGAGATCTCCGCCCAG GTGCTTAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAACGATAAAGTCEST: gi|58696207|gb|CK084894.1|CK084894
genomic: ACTGTCCCGCCATTGGCAAGCAGTTCGCCGCCGAGGAGATCTCCGCCCAGgtataggggt ... tgttctccagGTGCTTAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAACGATAAAGTC
EST: ACTGTCCCGCCATTGGCAAGCAGTTCGCCGCCGAGGAGATCTCCGCCCAG GTGCTTAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAACGATAAAGTCEST: gi|58609644|gb|CK037677.1|CK037677
genomic: ACTGTCCCGCCATTGGCAAGCAGTTCGCCGCCGAGGAGATCTCCGCCCAGgtataggggt ... tgttctccagGTGCTTAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAACGATAAAGTC
EST: ACTGTCCCGCCATTGGCAAGCAGTTCGCCGCCGAGGAGATCTCCGCCCAG GTGCTTAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAACGATAAAGTC
genomic: ACTGTCCCGCCATTGGCAAGCAGTTCGCCGCCGAGGAGATCTCCGCCCAGgtataggggt ... tgttctccagGTGCTTAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAACGATAAAGTC
gttttatggttcaaattgtttttaatccgagtgttgatcattttatgttctccagGTGCTTAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAACGATAAAGTCACAAAGGCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGA
tgttctcc CT-rich tract
ttcaaattgtttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatagcatgtgcatgcaaatgttttatgtatgcctgcaaaataagttttatggttcaaattgtttttaatccgagtgttgatcattttatgttctccagGTGCTTAGAAAGCTGGTGGATGATGCATCAAAGTTCTTGAACGATAAAGTCACAAAGGCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGA
- -tagcatg
- - - - - tgcatgc
- - - - - - - - - - - - - -tgtatgc
- - - - - - - - - - - - - - - - - ctgcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat