1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataacaatactgtgttgttgaaatgcattctaaaactaactttggcatgattacattttaagtatttttttccttacaatatgcttaaatttactggcagGTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTTAAGAATATAAGGAGGAGGATGACACCACAGCCACTTAAGATCCGTGCTG
species | Oryza sativa |
transcript | LOC_Os03g18510.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGACTCACTCACCTACGAGGAGAAGGAGACCGGCGCTGACGGACAGGAG GTGACTAAGGTGGTGCCTGCTGTCEST: gi|29615907|gb|CB620919.1|CB620919
genomic: TCGACTCACTCACCTACGAGGAGAAGGAGACCGGCGCTGACGGACAGGAGgttgtgttcg ... ttactggcagGTGACTAAGGTGGTGCCTGCTGTC
EST: GAGAAGGAGACCGGCGCTGACGGACAGGAG GTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTTEST: gi|86495831|gb|CI138464.1|CI138464
genomic: GAGAAGGAGACCGGCGCTGACGGACAGGAGgttgtgttcg ... ttactggcagGTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTT
EST: GACGGACAGGAG GTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTTEST: gi|25800313|gb|CA756274.1|CA756274
genomic: GACGGACAGGAGgttgtgttcg ... ttactggcagGTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTT
EST: TCGACTCACTCACCTACGAGGAGAAGGAGACCGGCGCTGACGGACAGGAG GTGACTAAGGTGCG-GCCTGCTEST: gi|3767755|gb|AU031782.1|AU031782
genomic: TCGACTCACTCACCTACGAGGAGAAGGAGACCGGCGCTGACGGACAGGAGgttgtgttcg ... ttactggcagGTGACTAAGGTG-GTGCCTGCT
EST: CTCACCTACGAGGAGAAGGAGACCGGCGCTGACGGACAGGAG GTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTTEST: gi|218497968|gb|FG969492.1|FG969492
genomic: CTCACCTACGAGGAGAAGGAGACCGGCGCTGACGGACAGGAGgttgtgttcg ... ttactggcagGTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTT
EST: TCGACTCACTCACCTACGAGGAGAAGGAGACCGGCGCTGACGGACAGGAG GTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTT
genomic: TCGACTCACTCACCTACGAGGAGAAGGAGACCGGCGCTGACGGACAGGAGgttgtgttcg ... ttactggcagGTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTT
catgattacattttaagtatttttttccttacaatatgcttaaatttactggcagGTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTTAAGAATATAAGGAGGAGGATGACACCACAGCCACTTAAGATCCGTGCTG
tccttac putative branch site (score: 24)
attttaagtatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataacaatactgtgttgttgaaatgcattctaaaactaactttggcatgattacattttaagtatttttttccttacaatatgcttaaatttactggcagGTGACTAAGGTGGTGCCTGCTGTCACCCCTGAGGTTAAGGATGCCCTAGTTAAGAATATAAGGAGGAGGATGACACCACAGCCACTTAAGATCCGTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- aacaata
- - - - - - - -tgttgaa
- - - - - - - - - - - -tgcattc
- - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - -ggcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttaa