1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgatctctctctttccccctctctatcgcacgctgcggttcggagtaaaatgtcgcacctgattttaggagatttagCTGTTCCTGTTGTTGCAGATGCTAAAGAGTCCTCGAAGGAGAGCAGTGTGGTGGAGCAGGTGGAATCTATGGCCGATCAGAAGGTTGTCATTGCTGAG
species | Oryza sativa |
transcript | LOC_Os03g17930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTGCGGAGCCGGAGCGTGCTCTCGGCGAACCCGCCGTCGACGCATGAG CTGTTCCTGTTGGTGCAGATGCTAAAGAGTCCEST: gi|88576200|gb|CI670345.1|CI670345
genomic: CGCTGCGGAGCCGGAGCGTGCTCTCGGCGAACCCGCCGTCGACGCAGGAGgtgatctctc ... ggagatttagCTGTTCCTGTTGTTGCAGATGCTAAAGAGTCC
EST: CGNTGCGGAGCCGGAGCGTGCTCTCGGGGAAACCGCCGTCGACCCAGGAG CTGTTCCTGTTGTT
genomic: CGCTGCGGAGCCGGAGCGTGCTCTCGGCGAACCCGCCGTCGACGCAGGAGgtgatctctc ... ggagatttagCTGTTCCTGTTGTT
ctatcgcacgctgcggttcggagtaaaatgtcgcacctgattttaggagatttagCTGTTCCTGTTGTTGCAGATGCTAAAGAGTCCTCGAAGGAGAGCAGTGTGGTGGAGCAGGTGGAATCTATGGCCGATCAGAAGGTTGTCATTGCTGAG
acctgat putative branch site (score: 2)
agtaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatctctctctttccccctctctatcgcacgctgcggttcggagtaaaatgtcgcacctgattttaggagatttagCTGTTCCTGTTGTTGCAGATGCTAAAGAGTCCTCGAAGGAGAGCAGTGTGGTGGAGCAGGTGGAATCTATGGCCGATCAGAAGGTTGTCATTGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA