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gtgagttagccgatccatggcgctcgctctccaatctccattgccgcactggggttttgtgttaatcatgtcgctaaattgtgtgttttgctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
species | Oryza sativa |
transcript | LOC_Os03g04970.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|58662224|gb|CK050904.1|CK050904
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88325659|gb|CI648098.1|CI648098
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88353857|gb|CI634648.1|CI634648
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TAGTCTCTTGCCATGTACCGGGCGGCGGCCAGCCTCGCCTCCAAGGCCNG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88405616|gb|CI588822.1|CI588822
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|29634585|gb|CB639594.1|CB639594
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|58669928|gb|CK058614.1|CK058614
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88695499|gb|CI737537.1|CI737537
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88423126|gb|CI613427.1|CI613427
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88341982|gb|CI644319.1|CI644319
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGNGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88400418|gb|CI593493.1|CI593493
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: ACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCATCCAAGGCCCG TCAAGCCGGGAGCEST: gi|2312198|gb|C28353.1|C28353
genomic: ACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCC-TCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGC
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88338587|gb|CI645841.1|CI645841
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88727663|gb|CI749465.1|CI749465
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|58669467|gb|CK058153.1|CK058153
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|58662507|gb|CK051193.1|CK051193
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88324939|gb|CI644950.1|CI644950
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88326100|gb|CI651154.1|CI651154
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|66914441|gb|CX101289.1|CX101289
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88302926|gb|CI668772.1|CI668772
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88332488|gb|CI651648.1|CI651648
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88329101|gb|CI658761.1|CI658761
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88363061|gb|CI616218.1|CI616218
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88723094|gb|CI746604.1|CI746604
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88347815|gb|CI655168.1|CI655168
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAGEST: gi|88302809|gb|CI668655.1|CI668655
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
EST: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCG TCAAGCCGGGAGCAGCGCTCGTCAG
genomic: TACTCTCTTGCCATGTACCGCGCGGCGGCCAGCCTCGCCTCCAAGGCCCGgtgagttagc ... ctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
gcactggggttttgtgttaatcatgtcgctaaattgtgtgttttgctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
cgctaaa putative branch site (score: 36)
ttttgcttt putative PPT
ttaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttagccgatccatggcgctcgctctccaatctccattgccgcactggggttttgtgttaatcatgtcgctaaattgtgtgttttgctttgtgcagTCAAGCCGGGAGCAGCGCTCGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG