Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgagtgcggtggccgaggccccggcgcctcctcctcctccccgcttcgattcgattcgacacttgtttcgcctgttcgtcactgctggatttcctcgttttcgcccagGGAGCCTCCAATCGTGGGATCCAGGTCCATGAGGCGGCCCTCGCCGCTCAATCTGGTGACCCCTCTTCCATTCCATTCCATTCACGTCCTTGTTTTTTCC
Basic information
species | Oryza sativa |
transcript | LOC_Os03g01750.5 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os03g01750.5 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G052546_T01 (Zea mays), 3'ss of exon 1
gtaagtgagtgcggtggccgaggccccggcgcctcctcctcctccccgcttcgattcgattcgacacttgttt---cgcctgttcgtcactgctggatttcctcgttttcgcccagGGAGCCTCCAATCGTGGGATCCAGGTCCATGAGGCGGCCCTCGCCGCTCAATCTGGTGACCCCTCTTCCATTCCATTCCATTCACGTCCTTGTTTTTTCC
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-------------------gtaagcgcccctccctccctccctcctcgttccgtttcggtccgtcctccggtaacgcgctcgcctgct-ccgcttggctcatggattttcctccagGGAGCCTCCAATCGTGGGGTCCAGGTCGATGAGGCGGCCCTCTCCGCTGAATCTG---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29678199|gb|CB674474.1|CB674474EST: CGGGCAGGGCACGGGAGGGAAGCCATGAACTGCCTCCAGAACCTGCTCAA GGAGCCTCCAATCGTGGGATCCAGGTCCATGAGGCGGCCCTCGCCGCTCAA
genomic: CGGGCAGGGCACGGGAGGGAAGCCATGAACTGCCTCCAGAACCTGCTCAAgtaagtgagt ... tttcgcccagGGAGCCTCCAATCGTGGGATCCAGGTCCATGAGGCGGCCCTCGCCGCTCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attcgacacttgtttcgcctgttcgtcactgctggatttcctcgttttcgcccagGGAGCCTCCAATCGTGGGATCCAGGTCCATGAGGCGGCCCTCGCCGCTCAATCTGGTGACCCCTCTTCCATTCCATTCCATTCACGTCCTTGTTTTTTCC
tttcctcgttttcgcc CT-rich tract