1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagcccccatcccaaaccctcgatcccatccatctcgcgagtttcttctcggcttttgctcagatcaaaccccccggaaaaaaactgaatcgaatcgccggtggaaacggaaaaatcgcagCCGCTTCGTGCTCAACGTGCCCAAGGAGGATTTGGAGTCGTTCGAGCGGATCCTGTTCTTGCTGGAGCAGGCGCACTGGTTCTACGAGGACAACTCCGTC
species | Oryza sativa |
transcript | LOC_Os02g56210.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGCCGCAGGAGCTTCTCGACGATCTCTGCAG CCGCTTCGTGCTCAACGTGCCCAAGGAGGATTTGGAGTCGTTCGAGCGGATEST: gi|58599901|gb|CK010429.1|CK010429
genomic: GCCGCCGCAGGAGCTTCTCGACGATCTCTGCAGgtagccccca ... aaaatcgcagCCGCTTCGTGCTCAACGTGCCCAAGGAGGATTTGGAGTCGTTCGAGCGGAT
EST: GCCGCCGCAGGAGCTTCTCGACGATCTCTGCAG CCGCTTCGTGCTCAACGTGCCCAAGGNAGGATTTGGAGTCGTTCGAGCGGAEST: gi|58653383|gb|CK042063.1|CK042063
genomic: GCCGCCGCAGGAGCTTCTCGACGATCTCTGCAGgtagccccca ... aaaatcgcagCCGCTTCGTGCTCAACGTGCCCAAGG-AGGATTTGGAGTCGTTCGAGCGGA
EST: TCGTCGAGGGGGCAGCTGCCGCCGCATGAGCTTCTCGACGATCTCTGCAG CCGCTTCGTGCTCAACGTGCCCAAGGAGGATTTGGAGTCGTCCGAGCGGATEST: gi|58597464|gb|CK007992.1|CK007992
genomic: TCGTCGAGGGGGCAGCTGCCGCCGCAGGAGCTTCTCGACGATCTCTGCAGgtagccccca ... aaaatcgcagCCGCTTCGTGCTCAACGTGCCCAAGGAGGATTTGGAGTCGTTCGAGCGGAT
EST: TCGTCGAGGGGGCAGCTGCCGCCGCAGGAGCTTCTCGACGATCTCTGCAG CCGCTTCGTGCTCAACGTGCCCAAGGAGGATTTGGAGTCGTTCGAGCGGATEST: gi|58599652|gb|CK010180.1|CK010180
genomic: TCGTCGAGGGGGCAGCTGCCGCCGCAGGAGCTTCTCGACGATCTCTGCAGgtagccccca ... aaaatcgcagCCGCTTCGTGCTCAACGTGCCCAAGGAGGATTTGGAGTCGTTCGAGCGGAT
EST: TCGTCGAGGGGGCAGCTGCCGCCGCAGGAGCTTCTCGACGATCTCTGCAG CCGCTTCGTGCTCAACGTGCCCAAGGAGGATTTGGAGTCGTTCGAGCGGAT
genomic: TCGTCGAGGGGGCAGCTGCCGCCGCAGGAGCTTCTCGACGATCTCTGCAGgtagccccca ... aaaatcgcagCCGCTTCGTGCTCAACGTGCCCAAGGAGGATTTGGAGTCGTTCGAGCGGAT
aaaccccccggaaaaaaactgaatcgaatcgccggtggaaacggaaaaatcgcagCCGCTTCGTGCTCAACGTGCCCAAGGAGGATTTGGAGTCGTTCGAGCGGATCCTGTTCTTGCTGGAGCAGGCGCACTGGTTCTACGAGGACAACTCCGTC
aaaaaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcccccatcccaaaccctcgatcccatccatctcgcgagtttcttctcggcttttgctcagatcaaaccccccggaaaaaaactgaatcgaatcgccggtggaaacggaaaaatcgcagCCGCTTCGTGCTCAACGTGCCCAAGGAGGATTTGGAGTCGTTCGAGCGGATCCTGTTCTTGCTGGAGCAGGCGCACTGGTTCTACGAGGACAACTCCGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG