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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaaatgatttgactcactgtttagcatctgccttgcatttattgatgttttttacttgatccatcatcttacccttagGTTCCATCGAATGACTGATGGATTAGGGTGAGGTGTTGTTCACAGATAAGAGAGAAGGTGTCTTGTGTGCTACCACTCTGTCATGCCATCTTGCCGAGGG

Basic information

species Oryza sativa
transcript LOC_Os02g39530.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58694467|gb|CK083154.1|CK083154
EST:     TCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACAGT                         GTTCCATCGAATGACTGATGGATTAGGGTGAGGTGTTGTTCACAGATAAGA
genomic: TCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACAGTgtaaggaaat ... ttacccttagGTTCCATCGAATGACTGATGGATTAGGGTGAGGTGTTGTTCACAGATAAGA
EST: gi|33682534|gb|CF310773.1|CF310773
EST:     TCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACAGT                         GTTCCATCGAATGACTGATGGATTAAGGTGAGGGTGTTGTTCACAGATAAG
genomic: TCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACAGTgtaaggaaat ... ttacccttagGTTCCATCGAATGACTGATGGATTAGGGTGAGG-TGTTGTTCACAGATAAG
EST: gi|87009724|gb|CI310827.1|CI310827
EST:     TCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACAGT                         GTTCCATCGAATGACTGATGGATT
genomic: TCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACAGTgtaaggaaat ... ttacccttagGTTCCATCGAATGACTGATGGATT
EST: gi|88444898|gb|CI696337.1|CI696337
EST:     TCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACAGT                         GTTCCATCGAATGACTGATGGATTAGGGTGA
genomic: TCCTCCGCTTCCCGTTATGCTTCGTGCTGCTGCACACAAAAAACAACAGTgtaaggaaat ... ttacccttagGTTCCATCGAATGACTGATGGATTAGGGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatctgccttgcatttattgatgttttttacttgatccatcatcttacccttagGTTCCATCGAATGACTGATGGATTAGGGTGAGGTGTTGTTCACAGATAAGAGAGAAGGTGTCTTGTGTGCTACCACTCTGTCATGCCATCTTGCCGAGGG
                                          atcttac  putative branch site (score: 3)
                                           tcttaccctt  CT-rich tract
             atttattgatgttttt  TA-rich tract