Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctgaattaacataaaccgccacttgaatctcctcttatgtacaatctctattctgtttctttcactgatagattgttgatcatgttgtagGGCGTATGTGTTTTTCAGTTCTCCCATACAGAAAGAATTAGTTACTCAAATAAAAAAAGATTCAAGTGTACTACCCCGTATTGGTGCACTTAGTGAG

Basic information

species Oryza sativa
transcript LOC_Os02g25580.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g25580.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G052880_T01 (Zea mays), 3'ss of exon 5
gtatgtctgaattaacataaaccgccacttgaatctcctcttatgtacaatctctattctgtttctttcactgatagattgttgatcatgttgtagGGCGTATGTGTTTTTCAGTTCTCCCATACAGAAAGAATTAGTTACTCAAATAAAAAAAGATTCAAGTGTACTACCCCGTATTGGTGCACTTAGTGAG
    || || |  |||||| ||  ||| |     ||  ||||||     ||   |  | || ||   |   |  | |  | ||  |  ||||| ||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||| |||||||  ||||||||||||
----gtatgtac-aacatatacttccagtca---cttttcttata---gatacttgctttggtttcatattttttggcgtattacttgtgttgcagGGCATATGTGTTTTTCAGTTCTCCCGTACATAAAGAATTAGTTGCTCAAATAAAAAAGGATTCAAGTGTACTACCTCGTATTGCCGCACTTAGTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33676893|gb|CF305132.1|CF305132
EST:     CCGTTATACAAGAA                         GGCGTATGTGTTTTTCAGTTCTCCCATACAGAAAGAATTAGTTACTCAAAT
genomic: CCGTTATACAAGAAgtatgtctga ... catgttgtagGGCGTATGTGTTTTTCAGTTCTCCCATACAGAAAGAATTAGTTACTCAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtacaatctctattctgtttctttcactgatagattgttgatcatgttgtagGGCGTATGTGTTTTTCAGTTCTCCCATACAGAAAGAATTAGTTACTCAAATAAAAAAAGATTCAAGTGTACTACCCCGTATTGGTGCACTTAGTGAG
                    tttcttt  TA-rich tract