1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtagcgacctccgaaaccgagccacattcgtttgctccgctatgctctacccgttccgttgtctgacgcgatgccgcgctttgttttttttttgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
species | Oryza sativa |
transcript | LOC_Os01g73160.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88392465|gb|CI612939.1|CI612939
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTGCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88311142|gb|CI658055.1|CI658055
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|25800605|gb|CA756566.1|CA756566
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: CCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCNAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|33673989|gb|CF302228.1|CF302228
genomic: CCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88724659|gb|CI747918.1|CI747918
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|33660783|gb|CF291750.1|CF291750
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88301884|gb|CI667730.1|CI667730
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88739378|gb|CI762886.1|CI762886
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|55435427|gb|CV730845.1|CV730845
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88378851|gb|CI681669.1|CI681669
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88353557|gb|CI632948.1|CI632948
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|2428870|gb|C73333.1|C73333
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCG-CGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|33670983|gb|CF299222.1|CF299222
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|66918131|gb|CX104979.1|CX104979
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88364474|gb|CI644552.1|CI644552
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88360769|gb|CI647779.1|CI647779
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88325019|gb|CI645035.1|CI645035
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88334750|gb|CI676543.1|CI676543
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCANCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88341101|gb|CI638657.1|CI638657
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88290586|gb|CI666959.1|CI666959
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|86831237|gb|CI297506.1|CI297506
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88343622|gb|CI677601.1|CI677601
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGNCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|33659995|gb|CF290962.1|CF290962
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88313669|gb|CI671802.1|CI671802
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88727672|gb|CI749474.1|CI749474
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88338425|gb|CI645679.1|CI645679
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|33815878|gb|CF333786.1|CF333786
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88329374|gb|CI653291.1|CI653291
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88734384|gb|CI757892.1|CI757892
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|88342338|gb|CI645860.1|CI645860
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATGEST: gi|55435537|gb|CV730899.1|CV730899
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
EST: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATG ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
genomic: AAGCCGCCGGCGCCGCCGCCCTCCTCCGGTTCGAGCTCTCCGCCACCATGgtgagtagcg ... tgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
tacccgttccgttgtctgacgcgatgccgcgctttgttttttttttgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
gtctgac putative branch site (score: 23)
cgctttgttttttttt putative PPT
tttgttttttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtagcgacctccgaaaccgagccacattcgtttgctccgctatgctctacccgttccgttgtctgacgcgatgccgcgctttgttttttttttgtgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAGTACCTCTTCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC