1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtctatctaatattcacctgcgtacatctggacatttgcattagtaattataaataaacatgtttgtacaccggtttagccctatgcccttattgttcagGTAACAAGGAGCTGCTTTCGTTGACCGCAGGTTATAAATACAAAGAATATTTCAGGACAAAGATTACATCCTGATTTCCTCTCCAAG
species | Oryza sativa |
transcript | LOC_Os01g68970.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
aattataaataaacatgtttgtacaccggtttagccctatgcccttattgttcagGTAACAAGGAGCTGCTTTCGTTGACCGCAGGTTATAAATACAAAGAATATTTCAGGACAAAGATTACATCCTGATTTCCTCTCCAAG
cccttatt CT-rich tract
taaataaacatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctatctaatattcacctgcgtacatctggacatttgcattagtaattataaataaacatgtttgtacaccggtttagccctatgcccttattgttcagGTAACAAGGAGCTGCTTTCGTTGACCGCAGGTTATAAATACAAAGAATATTTCAGGACAAAGATTACATCCTGATTTCCTCTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - cctgcgt
- - - - - - - - - - - - catctgg
- - - - - - - - - - - - - - - - catttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgccc