1 5' 3' | 2 5' 3' |
...tataaaaaaaaatcatccgctcggatattttgggacggagtagcacacatctacgcttacatgtgtatacgtatgcttacgactcgaaaaatgagtgaagAATGCAAGGAGCAAACGCATGCATGGGGGCGCGGTGGCGTCTCTGGTGGACCTGGTGGGGTCTGCCGTGTTCTTCGCCGGCGGCTCGCCGAAGACGGGGG
species | Oryza sativa |
transcript | LOC_Os01g65950.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACCGTCCCTCCTCGCCTCACG AATGCAAGGAGCAAACGCATGCATGGGGGCGCGGTGGCGTCTCTGGTGGACEST: gi|117232032|gb|CT842043.1|CT842043
genomic: TCACCGTCCCTCCTCGCCTCACGgtacgctact ... atgagtgaagAATGCAAGGAGCAAACGCATGCATGGGGGCGCGGTGGCGTCTCTGGTGGAC
EST: TCCAGCCCGGCCGCGTCCTCTGCTCCTTCACCGTCCCTCCTCGCCTCACG AATGCAAGGAGCAAACGCATGCATGGGGGCGCGGTGGCGTCTCTGGTGGACEST: gi|88549110|gb|CI478968.1|CI478968
genomic: TCCAGCCCGGCCGCGTCCTCTGCTCCTTCACCGTCCCTCCTCGCCTCACGgtacgctact ... atgagtgaagAATGCAAGGAGCAAACGCATGCATGGGGGCGCGGTGGCGTCTCTGGTGGAC
EST: CTCCTTCACCGTCCCTCCTCGCCTCACG AATGCAAGGAGCAAACGCATGCATGGGGGCGC-GTNGGCGTCTCTGGTGGA
genomic: CTCCTTCACCGTCCCTCCTCGCCTCACGgtacgctact ... atgagtgaagAATGCAAGGAGCAAACGCATGCATGGGGGCGCGGT-GGCGTCTCTGGTGGA
cacatctacgcttacatgtgtatacgtatgcttacgactcgaaaaatgagtgaagAATGCAAGGAGCAAACGCATGCATGGGGGCGCGGTGGCGTCTCTGGTGGACCTGGTGGGGTCTGCCGTGTTCTTCGCCGGCGGCTCGCCGAAGACGGGGG
tgcttac putative branch site (score: 2)
aaaaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataaaaaaaaatcatccgctcggatattttgggacggagtagcacacatctacgcttacatgtgtatacgtatgcttacgactcgaaaaatgagtgaagAATGCAAGGAGCAAACGCATGCATGGGGGCGCGGTGGCGTCTCTGGTGGACCTGGTGGGGTCTGCCGTGTTCTTCGCCGGCGGCTCGCCGAAGACGGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- -aaaaaaa
- - - - - - -catccgc
- - - - - - - - - - - - - - - - - - - - - - - -catctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac