Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattccccccagcactagtcgtctcacaatccagattccggatgagccggagacgctgctgatgagtgatgaggcttgggttttatcgatgcgctgcgctgttgctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCCGAGGTGCCCTCCGAGGACGTCGTCG

Basic information

species Oryza sativa
transcript LOC_Os01g62420.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62420.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G146206_T02 (Zea mays), 3'ss of exon 1
gtaagtattccccccagcactagtcgtctcacaatccagattccggatgagccggagacgctgctgatgagtgatgaggcttgggttttatcgatgcgctgcgctgttgctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCCGAGGTGCCCTCCGAGGACGTCGTCG
||||||   ||||| || ||     |   ||    |||   | |    ||   | |  ||  | |    || | |  || |||   | |   ||||   | ||||    | | |||||||| || || || |||||||||||||||||||||||||| |||||| | |||||||||||||| || ||||||||||
gtaagt---ccccctaggacccag-gctccaggcaccaccgttctctcgatttgaattcgacgttacgcagagttttggtttgatctct---gatggcatccgct-cccccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCCGAGGTGCCCTCTGAAGACGTCGTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33666777|gb|CF297744.1|CF297744
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33693438|gb|CF321677.1|CF321677
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33793081|gb|CF322423.1|CF322423
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33692885|gb|CF321124.1|CF321124
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33692149|gb|CF320388.1|CF320388
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|88575287|gb|CI669432.1|CI669432
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33694018|gb|CF322257.1|CF322257
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33689964|gb|CF318203.1|CF318203
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|2312292|gb|C28447.1|C28447
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33690687|gb|CF318926.1|CF318926
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33828594|gb|CF340117.1|CF340117
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33827559|gb|CF339596.1|CF339596
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33690113|gb|CF318352.1|CF318352
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33692177|gb|CF320416.1|CF320416
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33692251|gb|CF320490.1|CF320490
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33688513|gb|CF316752.1|CF316752
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33685938|gb|CF314177.1|CF314177
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33689979|gb|CF318218.1|CF318218
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|25800835|gb|CA756796.1|CA756796
EST:     GGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: GGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|88722774|gb|CI746284.1|CI746284
EST:     ATCCATCCATGGCTGCCAGGAAGTCCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33692667|gb|CF320906.1|CF320906
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|88391559|gb|CI600748.1|CI600748
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|86830034|gb|CI288672.1|CI288672
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|427784|gb|D23922.1|D23922
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33690102|gb|CF318341.1|CF318341
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33689283|gb|CF317522.1|CF317522
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGAGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33691585|gb|CF319824.1|CF319824
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33687151|gb|CF315390.1|CF315390
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGA-GCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33685460|gb|CF313699.1|CF313699
EST:     ATCCATCCATGGCTGCCAGGAAGTACTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|58679577|gb|CK068264.1|CK068264
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|58683989|gb|CK072676.1|CK072676
EST:     TCCATCCATGNGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: TCCATCCATG-GCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33826932|gb|CF339275.1|CF339275
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33828691|gb|CF340165.1|CF340165
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33692942|gb|CF321181.1|CF321181
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33829645|gb|CF340645.1|CF340645
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33828383|gb|CF340010.1|CF340010
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33686817|gb|CF315056.1|CF315056
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAAT-GGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGC
EST: gi|33691808|gb|CF320047.1|CF320047
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|58669404|gb|CK058090.1|CK058090
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33689638|gb|CF317877.1|CF317877
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|58674808|gb|CK063495.1|CK063495
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|163927744|gb|EG712492.1|EG712492
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33693863|gb|CF322102.1|CF322102
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTTTTTTATGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33685357|gb|CF313596.1|CF313596
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33801873|gb|CF326808.1|CF326808
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33692386|gb|CF320625.1|CF320625
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33688347|gb|CF316586.1|CF316586
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33691552|gb|CF319791.1|CF319791
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33688724|gb|CF316963.1|CF316963
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33690870|gb|CF319109.1|CF319109
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|5003199|gb|AU068308.1|AU068308
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgagtgatgaggcttgggttttatcgatgcgctgcgctgttgctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCCGAGGTGCCCTCCGAGGACGTCGTCG
 tgctgat  putative branch site (score: 3)
                     ttttat  TA-rich tract