1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgtaaagttctgtttactgtgtattctatgagttactcgctatagtcagtatgtgttcttattgaatccggtctgattgactactatgattttatatagATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAG
species | Oryza sativa |
transcript | LOC_Os01g55360.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCG ATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTEST: gi|58661284|gb|CK049964.1|CK049964
genomic: GCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCGgtgaggtctc ... ttttatatagATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTT
EST: GCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCG ATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTGTCTGCTTEST: gi|88307950|gb|CI646385.1|CI646385
genomic: GCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCGgtgaggtctc ... ttttatatagATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTT
EST: GCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCG ATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTCEST: gi|29679197|gb|CB675472.1|CB675472
genomic: GCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCGgtgaggtctc ... ttttatatagATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTT
EST: GCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCG ATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTT
genomic: GCCTTTCTCCGGCGACGGCGCCCTCCTCCGGCCCGAGGGCTCGCTTCGCGgtgaggtctc ... ttttatatagATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTT
gtcagtatgtgttcttattgaatccggtctgattgactactatgattttatatagATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAG
gattgac putative branch site (score: 3)
tactatgattttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtaaagttctgtttactgtgtattctatgagttactcgctatagtcagtatgtgttcttattgaatccggtctgattgactactatgattttatatagATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA