1 5' 3' | 2 5' 3' | 3 5' 3' |
...caatcatatatttgtactgcaatgtgccattctgtcattcttttgggctcttatctatttgtgctgcaataatattacctctctgtcatttattggacagATGGATGTGGAGCAACATGGTGATGGAGAGATGGCCGAAGAGGAAGAGGTTTTTGATGAAGGAAGCACATCGTCAAGTGATGATGAGATTATTTCCATGT
species | Oryza sativa |
transcript | LOC_Os01g49870.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCGGCGGCCCTCCG ATGGATGTGGAGCAACATGGTGATGGAGAGATGGCCGAAGAGGAAGAGGTT
genomic: AGCTTCGGCGGCCCTCCGgtgagcattg ... tattggacagATGGATGTGGAGCAACATGGTGATGGAGAGATGGCCGAAGAGGAAGAGGTT
ggctcttatctatttgtgctgcaataatattacctctctgtcatttattggacagATGGATGTGGAGCAACATGGTGATGGAGAGATGGCCGAAGAGGAAGAGGTTTTTGATGAAGGAAGCACATCGTCAAGTGATGATGAGATTATTTCCATGT
cctctctgtcattt CT-rich tract
aataatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatcatatatttgtactgcaatgtgccattctgtcattcttttgggctcttatctatttgtgctgcaataatattacctctctgtcatttattggacagATGGATGTGGAGCAACATGGTGATGGAGAGATGGCCGAAGAGGAAGAGGTTTTTGATGAAGGAAGCACATCGTCAAGTGATGATGAGATTATTTCCATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - tactgca
- - - - - - - - - - - - -gccattc
- - - - - - - - - - - - - - - - - -cattctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgca