1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtaccgctttccgcgagagatcccgtggggatagacccctgcctctgttttttttcttgtccgtttgatctcgtcgtgccggaaaaggcatcttcgtgagctctgtttgcgattgaattgacctcgactggtgttggaatttgtgtggtgttagGTGATCTACGAGCTGAAGGCGGGTGGCGTGGACGAGCGGCGGTTGGTTGGAGTTAAGCTTGAGAAGCTCGCCGAGGGAGACACTG
species | Oryza sativa |
transcript | LOC_Os01g46510.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCCGACGCCAACGACCGCGTCTCCGTCTGGGACTGGGAGCACCGCCAG GTGATCTACGAGCTGAAGGCGGGTGGCGTGGACGAGCGGCGGTTGGTTGGAEST: gi|88301497|gb|CI597190.1|CI597190
genomic: CCGCCGACGCCAACGACCGCGTCTCCGTCTGGGACTGGGAGCACCGCCAGgtaccgcttt ... gtggtgttagGTGATCTACGAGCTGAAGGCGGGTGGCGTGGACGAGCGGCGGTTGGTTGGA
EST: CCGCCGACGCCAACGACCGCGTCTCCGTCTGGGACTGGGAGCAACGCCAG GTGATCTACGAGCTGAAGGCGGGTGGCGTGGACGAGCGGCGGTCGGTTGGAEST: gi|88826572|gb|CI777137.1|CI777137
genomic: CCGCCGACGCCAACGACCGCGTCTCCGTCTGGGACTGGGAGCACCGCCAGgtaccgcttt ... gtggtgttagGTGATCTACGAGCTGAAGGCGGGTGGCGTGGACGAGCGGCGGTTGGTTGGA
EST: CCGCCGACGCCAACGACCGCGTCTCCGTCTGGGACTGGGAGCACCGCCAG GTGATCTACGAGCTGAAGGCGGGTGGCGTGGACGAGCGGCGGTTGGTTGGAEST: gi|88315291|gb|CI613560.1|CI613560
genomic: CCGCCGACGCCAACGACCGCGTCTCCGTCTGGGACTGGGAGCACCGCCAGgtaccgcttt ... gtggtgttagGTGATCTACGAGCTGAAGGCGGGTGGCGTGGACGAGCGGCGGTTGGTTGGA
EST: CCGCCGACGCCAACGACCGCGTCTCCGTCTGGGACTGGGAGCACCGCCAG GTGATCTACGAGCTGAAGGGGGGTGGCGTGGACGAGCGGCGGTTGGTTGGAEST: gi|88447491|gb|CI584606.1|CI584606
genomic: CCGCCGACGCCAACGACCGCGTCTCCGTCTGGGACTGGGAGCACCGCCAGgtaccgcttt ... gtggtgttagGTGATCTACGAGCTGAAGGCGGGTGGCGTGGACGAGCGGCGGTTGGTTGGA
EST: CCGCCGACGCCAACGACCGCGTCTCCGTCTGGGACTGGGAGAACCGCCAG GTGATCTACGAGCTGAAGGCGGGTGGCGTGGACGAGCGGCGGTTGGTTGGAEST: gi|88405955|gb|CI591350.1|CI591350
genomic: CCGCCGACGCCAACGACCGCGTCTCCGTCTGGGACTGGGAGCACCGCCAGgtaccgcttt ... gtggtgttagGTGATCTACGAGCTGAAGGCGGGTGGCGTGGACGAGCGGCGGTTGGTTGGA
EST: CCGCCGACGCCAACGACCGCGTCTCCGTCTGGGACTGGGAGCACCGCCAG GTGATCTACGAGCTGAAGGCGGGTGGCGTGGACGAGCGGCGGTTGGTTGGA
genomic: CCGCCGACGCCAACGACCGCGTCTCCGTCTGGGACTGGGAGCACCGCCAGgtaccgcttt ... gtggtgttagGTGATCTACGAGCTGAAGGCGGGTGGCGTGGACGAGCGGCGGTTGGTTGGA
gctctgtttgcgattgaattgacctcgactggtgttggaatttgtgtggtgttagGTGATCTACGAGCTGAAGGCGGGTGGCGTGGACGAGCGGCGGTTGGTTGGAGTTAAGCTTGAGAAGCTCGCCGAGGGAGACACTG
aattgac putative branch site (score: 3)
attgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccgctttccgcgagagatcccgtggggatagacccctgcctctgttttttttcttgtccgtttgatctcgtcgtgccggaaaaggcatcttcgtgagctctgtttgcgattgaattgacctcgactggtgttggaatttgtgtggtgttagGTGATCTACGAGCTGAAGGCGGGTGGCGTGGACGAGCGGCGGTTGGTTGGAGTTAAGCTTGAGAAGCTCGCCGAGGGAGACACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC