1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aacaccgctgatcagtcctgactatgtataatcttttcaaaactaaagtacattactaaattatttgacggacaccatgttaccacccacttatcttcagAGAGCAAGGATCCAAGCCAGCATCTCAGATTGAAGGAAAGGAGATGGAGTCTCTCCCTGTGCCGAGTGTTCAGTCAATGGTGGCGGCTGACGGTGGTGCC
species | Oryza sativa |
transcript | LOC_Os01g24980.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTTGTCTCGGTGAGCCTGTTAGGCGCCGTTGGAGGAGATTGAAATCAAG AGAGCAAGGATCCAAGCCAGCATCTCAGATTGAAGGAAAGGAGATGGAGTCEST: gi|29663537|gb|CB659812.1|CB659812
genomic: CGTTGTCTCGGTGAGCCTGTTAGGCGCCGTTGGAGGAGATTGAAATCAAGgtaaaaaatc ... ttatcttcagAGAGCAAGGATCCAAGCCAGCATCTCAGATTGAAGGAAAGGAGATGGAGTC
EST: CGTTGTCTCGGTGAGCCTGTTAAGCGCCGTTGGAGGAGATTGAAATCAAG AGAGCAAGGATCCAAGCCAGCATCTCAGATTGAAGGAAAGGAGATGGAGTCEST: gi|88315071|gb|CI610130.1|CI610130
genomic: CGTTGTCTCGGTGAGCCTGTTAGGCGCCGTTGGAGGAGATTGAAATCAAGgtaaaaaatc ... ttatcttcagAGAGCAAGGATCCAAGCCAGCATCTCAGATTGAAGGAAAGGAGATGGAGTC
EST: CGTTGTCTCGGTGAGCCTGTTAGGCGCCGTTGGAGGAGATTGAAATCAAG AGAGCAAGGATCCAAGCCAGCATCTCAGATTGAAGGAAAGGAGATGGAGTCEST: gi|88411134|gb|CI606353.1|CI606353
genomic: CGTTGTCTCGGTGAGCCTGTTAGGCGCCGTTGGAGGAGATTGAAATCAAGgtaaaaaatc ... ttatcttcagAGAGCAAGGATCCAAGCCAGCATCTCAGATTGAAGGAAAGGAGATGGAGTC
EST: CGTTGTCTCGGTGAGCCTGTTAGGCGCCGTTGGAGGAGATTGAAATCAAG AGAGCAAGGATCCAAGCCAGCATCTCACATTGAAGGAAAGGAGATGGAGTCEST: gi|88303227|gb|CI668875.1|CI668875
genomic: CGTTGTCTCGGTGAGCCTGTTAGGCGCCGTTGGAGGAGATTGAAATCAAGgtaaaaaatc ... ttatcttcagAGAGCAAGGATCCAAGCCAGCATCTCAGATTGAAGGAAAGGAGATGGAGTC
EST: CGTTGTCTCGGTGAGCCTGTTAGGCGCCGTTGGAGGAGATTGAAATCAAG AGAGCAAGGATCCAAGCCAGCATCTCAGATTGAAGGAAAGGAGATGGAGTCEST: gi|88363063|gb|CI616220.1|CI616220
genomic: CGTTGTCTCGGTGAGCCTGTTAGGCGCCGTTGGAGGAGATTGAAATCAAGgtaaaaaatc ... ttatcttcagAGAGCAAGGATCCAAGCCAGCATCTCAGATTGAAGGAAAGGAGATGGAGTC
EST: CGTTGTCTCGGTGAGCCTGTTAGGCGCCGTTGGAGGAGATTGAAATCAAG AGAGCAAGGATCCAAGCCAGCATCTCAGATTGAAGGAAAGGAGATGGAGTC
genomic: CGTTGTCTCGGTGAGCCTGTTAGGCGCCGTTGGAGGAGATTGAAATCAAGgtaaaaaatc ... ttatcttcagAGAGCAAGGATCCAAGCCAGCATCTCAGATTGAAGGAAAGGAGATGGAGTC
aagtacattactaaattatttgacggacaccatgttaccacccacttatcttcagAGAGCAAGGATCCAAGCCAGCATCTCAGATTGAAGGAAAGGAGATGGAGTCTCTCCCTGTGCCGAGTGTTCAGTCAATGGTGGCGGCTGACGGTGGTGCC
cttatcttc CT-rich tract
attactaaattatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaccgctgatcagtcctgactatgtataatcttttcaaaactaaagtacattactaaattatttgacggacaccatgttaccacccacttatcttcagAGAGCAAGGATCCAAGCCAGCATCTCAGATTGAAGGAAAGGAGATGGAGTCTCTCCCTGTGCCGAGTGTTCAGTCAATGGTGGCGGCTGACGGTGGTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -accgctg
- - - - - - - - cctgact
- - - - - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtta