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...tttatatgtgtggattcaattagattcagattgtctcctttttgggtgtgcctgatctgtgcctcttcattattgatcgtttaatactagtttttcacagGGGAGAAGATTTGCATGGGTTAGATCGCAGTTTCAAAGGTTCTTGATTGTTTTTCGTAATAAGTGCAAGAGCTGCTGATGTGATTTGGCAG
species | Oryza sativa |
transcript | LOC_Os01g08890.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGTCGTGCCCCTTGCGGCGTGCCGGCGCGTCATCCGTCTCTGGAAATCG GGGAGAAGATTTGCATGGGTEST: gi|29635631|gb|CB640640.1|CB640640
genomic: CTGTCGTGCCCCTTGCGGCGTGCCGGCGCGTCATCCGTCTCTGGAAATCGgtattgtgca ... tttttcacagGGGAGAAGATTTGCATGGGT
EST: CTGTCGTGCCCCTTGCGGCGTGCCGGCGCGTCATCCGTCTCTGGAAATCG GGGAGAAGATTTGCATGGGTTAGATCGCAGTTTCAAAGGTTCTTGATTGTT
genomic: CTGTCGTGCCCCTTGCGGCGTGCCGGCGCGTCATCCGTCTCTGGAAATCGgtattgtgca ... tttttcacagGGGAGAAGATTTGCATGGGTTAGATCGCAGTTTCAAAGGTTCTTGATTGTT
gtgtgcctgatctgtgcctcttcattattgatcgtttaatactagtttttcacagGGGAGAAGATTTGCATGGGTTAGATCGCAGTTTCAAAGGTTCTTGATTGTTTTTCGTAATAAGTGCAAGAGCTGCTGATGTGATTTGGCAG
tttttcac CT-rich tract
tttaatactagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatatgtgtggattcaattagattcagattgtctcctttttgggtgtgcctgatctgtgcctcttcattattgatcgtttaatactagtttttcacagGGGAGAAGATTTGCATGGGTTAGATCGCAGTTTCAAAGGTTCTTGATTGTTTTTCGTAATAAGTGCAAGAGCTGCTGATGTGATTTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - -gtgcctg