1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aacgagttagcagagagttgtaggcacgtatatatgcctgaacattgattactagtactattttcattcatatatcttaatttggctgtctttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGACTTGCTGTTCAATGCAACAGGCTCCACCACCAGCATGGCCTGGTCGAGC
species | Oryza sativa |
transcript | LOC_Os01g01710.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|58607529|gb|CK035562.1|CK035562
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTNGAGAAGGEST: gi|88415185|gb|CI584008.1|CI584008
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCT-GAGAAGG
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88372416|gb|CI619746.1|CI619746
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88314339|gb|CI604823.1|CI604823
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|58689337|gb|CK078024.1|CK078024
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88724979|gb|CI748238.1|CI748238
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|86905401|gb|CI285364.1|CI285364
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|33676538|gb|CF304777.1|CF304777
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|29613664|gb|CB618677.1|CB618677
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|29620639|gb|CB625650.1|CB625650
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|29688464|gb|CB684739.1|CB684739
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88357318|gb|CI622167.1|CI622167
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|58667396|gb|CK056082.1|CK056082
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88742624|gb|CI766132.1|CI766132
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|29681868|gb|CB678143.1|CB678143
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACATAGGAGGAGCTTTCAACCATCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAAAAGAGCAGTTTCCCTGAGAAGGAEST: gi|58688271|gb|CK076958.1|CK076958
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|58608359|gb|CK036392.1|CK036392
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88740293|gb|CI763801.1|CI763801
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|29617049|gb|CB622061.1|CB622061
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88311639|gb|CI574856.1|CI574856
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAAACAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|33663679|gb|CF294646.1|CF294646
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|29620626|gb|CB625637.1|CB625637
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|58607277|gb|CK035310.1|CK035310
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|58588201|gb|CF986509.1|CF986509
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGGGGAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAAGAAGGEST: gi|88415659|gb|CI591439.1|CI591439
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTG-AGAAGG
EST: GTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCCTCACAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGAAGTTTCCCTGAGAAGGEST: gi|88416935|gb|CI573650.1|CI573650
genomic: GTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAG-CTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGG
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|29620641|gb|CB625652.1|CB625652
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|33381852|gb|CF197195.1|CF197195
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: CTCATTCCTCGACTCCAACAAAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|58658820|gb|CK047500.1|CK047500
genomic: CTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88367566|gb|CI568338.1|CI568338
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACGAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|58688021|gb|CK076708.1|CK076708
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGCAGAAGGEST: gi|88389689|gb|CI603188.1|CI603188
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTG-AGAAGG
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88363103|gb|CI616260.1|CI616260
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88723513|gb|CI747023.1|CI747023
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88408200|gb|CI601678.1|CI601678
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88430991|gb|CI571981.1|CI571981
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88300419|gb|CI584838.1|CI584838
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|58589270|gb|CF987578.1|CF987578
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|58690161|gb|CK078848.1|CK078848
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|58604657|gb|CK015185.1|CK015185
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|58654652|gb|CK043332.1|CK043332
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGAGC-GCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|58671429|gb|CK060115.1|CK060115
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88736187|gb|CI759695.1|CI759695
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGAEST: gi|88430406|gb|CI567425.1|CI567425
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
EST: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAG TGGACCTCCCGTTTAAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
genomic: GGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatctt ... tttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGA
tgattactagtactattttcattcatatatcttaatttggctgtctttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGACTTGCTGTTCAATGCAACAGGCTCCACCACCAGCATGGCCTGGTCGAGC
tcttaat putative branch site (score: 87)
ctgtcttt putative PPT
tactattttcattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacgagttagcagagagttgtaggcacgtatatatgcctgaacattgattactagtactattttcattcatatatcttaatttggctgtctttattgcagTGGACCTCCCGTTTCAAACGAGGGACAGAAGAGCAGTTTCCCTGAGAAGGACTTGCTGTTCAATGCAACAGGCTCCACCACCAGCATGGCCTGGTCGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - tgtaggc
- - - - - - - - - - - - - - - - -atgcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctgt