1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tagtttagtctgatttttctaactgtcaaatgaatgtaaaattgaaaatttcagttttgcaattggttgttttaaatatgaaccaaagtatttgttttagGGCATAGAGAAGAAGACTGCCAAGTTGCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCAAAGC
species | Glycine max |
transcript | GLYMA18G07280.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGTGGTGGAGAAACTTGATTTCATCCAAGCTGTAGAAAGATCTATAGCT GGCATAGAGAAGAAGACTGCCAAGTTGCGAGGAAGTGAGAAGGCTGTAGTTEST: gi|208235872|gb|GE028700.1|GE028700
genomic: TTGTGGTGGAGAAACTTGATTTCATCCAAGCTGTAGAAAGATCTATAGCTgtaagtcaca ... tttgttttagGGCATAGAGAAGAAGACTGCCAAGTTGCGAGGAAGTGAGAAGGCTGTAGTT
EST: TTGTGGTGGAGAAACTTGATTTCATCCAAGCTGTAGAAAGATCTATAGCT GGCATAGAGAAGAAGACTGCCAAGTTGCGAGGAAGTGAGAAGGCTGTAGTT
genomic: TTGTGGTGGAGAAACTTGATTTCATCCAAGCTGTAGAAAGATCTATAGCTgtaagtcaca ... tttgttttagGGCATAGAGAAGAAGACTGCCAAGTTGCGAGGAAGTGAGAAGGCTGTAGTT
aaatttcagttttgcaattggttgttttaaatatgaaccaaagtatttgttttagGGCATAGAGAAGAAGACTGCCAAGTTGCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCAAAGC
tttgtttt CT-rich tract
ttgttttaaatatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtttagtctgatttttctaactgtcaaatgaatgtaaaattgaaaatttcagttttgcaattggttgttttaaatatgaaccaaagtatttgttttagGGCATAGAGAAGAAGACTGCCAAGTTGCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - -actgtca
- - - - - - - - - - - - - - - -gaatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaac