1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttaatgtgatagcttcaccatctccatgaaaaatttgttatgagcagttttctttctttgtttactcttatctacttgctgagttaatcttgaatttcagATCAAACAAAGCTGGTAAGTTGCTTGCTGAAGTATTGTTAAGAGGATACCAGGGAAATAG
species | Glycine max |
transcript | GLYMA16G24310.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTGCAGCAACTGACTTTATAGACAGTAAATGGACAATTGCTATTAACAG ATCAAACAAAGCTGGTAAGTTGCTTGCTGAAGTATTGTTAAGAGGATACCAEST: gi|58016695|gb|CX703437.1|CX703437
genomic: CTTGCAGCAACTGACTTTATAGACAGTAAATGGACAATTGCTATTAACAGgtgtatttta ... tgaatttcagATCAAACAAAGCTGGTAAGTTGCTTGCTGAAGTATTGTTAAGAGGATACCA
EST: CTTGCAGCAACTGACTTTATAGACAGTAAATGGACAATTGCTATTAACAG ATCAAACAAAGCTGGTAAGTTGCTTGCTGAAGTATTGTTAAGAGGATACCA
genomic: CTTGCAGCAACTGACTTTATAGACAGTAAATGGACAATTGCTATTAACAGgtgtatttta ... tgaatttcagATCAAACAAAGCTGGTAAGTTGCTTGCTGAAGTATTGTTAAGAGGATACCA
agttttctttctttgtttactcttatctacttgctgagttaatcttgaatttcagATCAAACAAAGCTGGTAAGTTGCTTGCTGAAGTATTGTTAAGAGGATACCAGGGAAATAG
agttaat putative branch site (score: 4)
ttaatcttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatgtgatagcttcaccatctccatgaaaaatttgttatgagcagttttctttctttgtttactcttatctacttgctgagttaatcttgaatttcagATCAAACAAAGCTGGTAAGTTGCTTGCTGAAGTATTGTTAAGAGGATACCAGGGAAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - cttcacc
- - - - - - - - - - - -ccatgaa
- - - - - - - - - - - - - - - - - -tgttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgagtt