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gtaaggtttctagtaagattcctgtactttggatataaaaacactaaattgtgatctttctgatgaaacagAAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGATCATGATGCTGGGAGCATGATCAAGTACCACAAGAACTTAACTTCCAAAG
species | Glycine max |
transcript | GLYMA16G09320.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAATTCATACTGCACAG AAAAGTGTGGTCAGTAGTTGGGATTTATGCACCGACAGAATTTACTTCGATEST: gi|254339690|gb|GR857815.1|GR857815
genomic: ATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAATTCATACTGCACAGgtaaggtttc ... gatgaaacagAAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGAT
EST: AGTCAGGACAGCAATTCATACTGCACAG AAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGATEST: gi|13479098|gb|BG508441.1|BG508441
genomic: AGTCAGGACAGCAATTCATACTGCACAGgtaaggtttc ... gatgaaacagAAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGAT
EST: ATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAATTCATACTGCACAG AAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGATEST: gi|193717070|gb|FK654698.1|FK654698
genomic: ATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAATTCATACTGCACAGgtaaggtttc ... gatgaaacagAAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGAT
EST: ATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAATTCATACTGCACAG AAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGATEST: gi|5677334|gb|AI938464.1|AI938464
genomic: ATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAATTCATACTGCACAGgtaaggtttc ... gatgaaacagAAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGAT
EST: ATTTATGGTTAAACACTGAATCAGTCAGGACAGCAATTCATACTGCACAG AAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGATEST: gi|57574399|gb|CX547374.1|CX547374
genomic: ATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAATTCATACTGCACAGgtaaggtttc ... gatgaaacagAAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGAT
EST: ATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAATTCATACTGCACAG AAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGATEST: gi|57574752|gb|CX547727.1|CX547727
genomic: ATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAATTCATACTGCACAGgtaaggtttc ... gatgaaacagAAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGAT
EST: ATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAATTCATACTGCACAG AAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGAT
genomic: ATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAATTCATACTGCACAGgtaaggtttc ... gatgaaacagAAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGAT
gattcctgtactttggatataaaaacactaaattgtgatctttctgatgaaacagAAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGATCATGATGCTGGGAGCATGATCAAGTACCACAAGAACTTAACTTCCAAAG
tctttctg CT-rich tract
atataaaaacactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggtttctagtaagattcctgtactttggatataaaaacactaaattgtgatctttctgatgaaacagAAAAGTGTGGTCAGTAGTTGGGATTTATGCACTGACAGAATTTACTTCGATCATGATGCTGGGAGCATGATCAAGTACCACAAGAACTTAACTTCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC