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gtattagaaccaatttaaaaaattgaatttcatagtttttaatgcaatcacatgtgatttttagaaggtatatttaatttttcatttagcttccttgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCTACAAACAAGTCAAAATTGGGAATCCCTTGGAGAAGGGGACTCTAGTTG
species | Glycine max |
transcript | GLYMA15G19670.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCEST: gi|193559875|gb|FK520512.1|FK520512
genomic: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
EST: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCEST: gi|16346239|gb|BI971834.1|BI971834
genomic: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
EST: CAGCGGTGTACAACTTGCCGTAGACTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCEST: gi|8827562|gb|BE211292.1|BE211292
genomic: CAGCGGTGTACAACTTGCCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
EST: GGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCEST: gi|20448705|gb|BQ252829.1|BQ252829
genomic: GGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
EST: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCEST: gi|193510918|gb|FK466772.1|FK466772
genomic: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
EST: TGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTEST: gi|193631080|gb|FK584549.1|FK584549
genomic: TGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACT-Ggtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGT
EST: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCEST: gi|254334456|gb|GR844241.1|GR844241
genomic: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
EST: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCEST: gi|20449046|gb|BQ253170.1|BQ253170
genomic: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
EST: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCEST: gi|5677082|gb|AI938212.1|AI938212
genomic: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
EST: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCEST: gi|254316180|gb|GR827717.1|GR827717
genomic: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
EST: GCTGGTCAGCGGTGTACAACTTGCCGTAGACTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCEST: gi|192309267|gb|FG999144.1|FG999144
genomic: GCTGGTCAGCGGTGTACAACTTGCCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
EST: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCEST: gi|9259105|gb|BE347252.1|BE347252
genomic: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
EST: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCEST: gi|15813675|gb|BI785950.1|BI785950
genomic: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
EST: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCEST: gi|19934585|gb|BQ079615.1|BQ079615
genomic: TTGCAGCTGTGGGTACTGCTGGTCAGCGGTGTACAACTTGCCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
EST: GGTCAGCGGTGTACAACTTGCCGTAGACTG TTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
genomic: GGTCAGCGGTGTACAACTTGCCGTAGACTGgtattagaac ... tgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTC
catgtgatttttagaaggtatatttaatttttcatttagcttccttgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCTACAAACAAGTCAAAATTGGGAATCCCTTGGAGAAGGGGACTCTAGTTG
atttaat putative branch site (score: 4)
cttccttgt putative PPT
atttttagaaggtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattagaaccaatttaaaaaattgaatttcatagtttttaatgcaatcacatgtgatttttagaaggtatatttaatttttcatttagcttccttgtactgcagTTTCTGCATGAAAGTATTTACGCAGATGTACTAGACCAACTTATTGGAGTCTACAAACAAGTCAAAATTGGGAATCCCTTGGAGAAGGGGACTCTAGTTG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
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