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...tgatctcactgactatgccaatgatatggtttaaaatgttaggaaggtgattaggtgggtagtgctatttgtgctaattctatgtgtttcgcccttgcagAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAATCCAAAAGATCTTCATCGCCTTCTTGAGAAGGTTGGAAGTCCCTCAGGGGTAGA
species | Glycine max |
transcript | GLYMA15G07970.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAG AGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAATCCAAEST: gi|7926380|gb|AW832406.1|AW832406
genomic: CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAGgtaaggattt ... gcccttgcagAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAATCCAA
EST: CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAG AGGCATTTGCAGTTTGTGAAAACTATEST: gi|151397919|gb|EV267792.1|EV267792
genomic: CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAGgtaaggattt ... gcccttgcagAGGCATTTGCAGTTTGTGAAAACTAT
EST: CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAG AGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAATCCAAEST: gi|151411265|gb|EV281076.1|EV281076
genomic: CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAGgtaaggattt ... gcccttgcagAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAATCCAA
EST: CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAG AG-CATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAAGATTCAATCCAA
genomic: CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAGgtaaggattt ... gcccttgcagAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAATCCAA
ggtgattaggtgggtagtgctatttgtgctaattctatgtgtttcgcccttgcagAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAATCCAAAAGATCTTCATCGCCTTCTTGAGAAGGTTGGAAGTCCCTCAGGGGTAGA
tgctaat putative branch site (score: 2)
tttcgccctt putative PPT
taattctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatctcactgactatgccaatgatatggtttaaaatgttaggaaggtgattaggtgggtagtgctatttgtgctaattctatgtgtttcgcccttgcagAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAATCCAAAAGATCTTCATCGCCTTCTTGAGAAGGTTGGAAGTCCCTCAGGGGTAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG