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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagactattcgacatagtgcatcttctattgaggctgtgttgcactttttttcttttagcattttatttaacgattaacaatttacatggatgctaacagAGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAGGAAATCATGCAATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATT

Basic information

species Glycine max
transcript GLYMA10G35290.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35290.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv13s0019g04640.t01 (Vitis vinifera), 3'ss of exon 7
gttagactattcgacatagtgcatcttctattgaggctgtgttgcactttttttcttttagcattttatttaacgattaacaatttacatggatgctaacagAGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAGGAAATCATGCAATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATT
                  ||      | | | | |  ||| ||   ||| ||||  ||||    | ||| |  |  || | ||   |  | | || |||||||| || || |||||||||||||||  || |||||||||||| || ||||| ||||||||||| |||||  | | | | ||||| || |||||||| ||||
------------------gtatggaatttgtagtg-ttgtcttcatcttcttttagtttatatctatatcttccattttataaaaaattttg-tggtaacagAGAGTACTGGAACATTGTGATGATTCAAGTACACAACAAATCATTATGGATGAAATCATGCAGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590609|gb|DB973340.1|DB973340
EST:     GGCAAGTTGTTGCACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAG                         AGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAG
genomic: GGCAAGTTGTTGCACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAGgttagactat ... atgctaacagAGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAG
EST: gi|26057513|gb|CA800427.1|CA800427
EST:     GGCAAGTTGTTGCACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAG                         AGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAG
genomic: GGCAAGTTGTTGCACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAGgttagactat ... atgctaacagAGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAG
EST: gi|6914723|gb|AW396253.1|AW396253
EST:     GGCAAGTTGTTGCACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAG                         AGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAG
genomic: GGCAAGTTGTTGCACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAGgttagactat ... atgctaacagAGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAG
EST: gi|254348286|gb|GR851965.1|GR851965
EST:     CAAGTTGTTGCACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAG                         AGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAG
genomic: CAAGTTGTTGCACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAGgttagactat ... atgctaacagAGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAG
EST: gi|21889642|gb|BQ742855.1|BQ742855
EST:     GGCAAGTTGTTGCACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAG                         AGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAG
genomic: GGCAAGTTGTTGCACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAGgttagactat ... atgctaacagAGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttcttttagcattttatttaacgattaacaatttacatggatgctaacagAGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAGGAAATCATGCAATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATT
                           gattaac  putative branch site (score: 2)
               attttatttaacgatt  TA-rich tract