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gtaaggatccttctttgttaaatttgaagaaagaaaattatacatattgatcttaataatgttcattctgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG
species | Glycine max |
transcript | GLYMA10G06580.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC ATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAAEST: gi|298169113|gb|HO020473.1|HO020473
genomic: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
EST: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC ATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAAAACATTTTCTAAEST: gi|12689938|gb|BG156274.1|BG156274
genomic: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
EST: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC ATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAAEST: gi|193336544|gb|FK299032.1|FK299032
genomic: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
EST: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC ATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAAEST: gi|12690012|gb|BG156348.1|BG156348
genomic: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
EST: CTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGGACAAA-TTCTGCC CTATTATGGATTATGTTTNTGGAA-TGAAACTGAAGCAAGACCATTTTCTAEST: gi|151394548|gb|EV264419.1|EV264419
genomic: CTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGG-ACAAAGTTCTGCCgtaaggatcc ... tgggattcagATAT-ATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTA
EST: TCCCTTTATATGTGAGTTCTTTAAAGGGTGCACTGGGACAAAGTTCTGCC ATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAAEST: gi|22525420|gb|BU084231.1|BU084231
genomic: TCCCTTTATATGTGAGTTCTTTAA-GGGTGCACTGG-ACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
EST: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC ATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAAEST: gi|120531830|gb|EH259963.1|EH259963
genomic: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
EST: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC ATATATGGATTATGTCTTTGGAAATGAAACTGAAGCAAGAACCATTT-CTAEST: gi|16348521|gb|BI974116.1|BI974116
genomic: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAAC-ATTTTCTA
EST: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC ATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
genomic: GCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCCgtaaggatcc ... tgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAA
ttgaagaaagaaaattatacatattgatcttaataatgttcattctgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG
tcttaat putative branch site (score: 3)
ttcattct putative PPT
aaagaaaattatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggatccttctttgttaaatttgaagaaagaaaattatacatattgatcttaataatgttcattctgggattcagATATATGGATTATGTTTTTGGAAATGAAACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA