1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgacagagagtataacctttttcatacttctggttgcaggtcataattgtcatattttaaatccctttttgtgcatgttgttctcagGCTGAATGTGATGAACTAGCTCAGCGTGCTGAAGCTTTGAAAGAAGAAAATGCCACTCTCCGATCAGAAGTGAGCCAGATCAGGAGTGAGTATGAGCAGC
species | Glycine max |
transcript | GLYMA08G34280.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGAANNAGNCTAATCGGGAANCTGCACGCAGATCCAGGTTACGGAAGCAG GCTGAATGTGATGAACTAGCTCAGCGTGCTGAAGCTTTGAAAGAAGAAAATEST: gi|16344775|gb|BI970370.1|BI970370
genomic: GGAAGCAGTCTAATCGGGAATCTGCACGCAGATCCAGGTTACGGAAGCAGgtgacagaga ... ttgttctcagGCTGAATGTGATGAACTAGCTCAGCGTGCTGAAGCTTTGAAAGAAGAAAAT
EST: GGAAGCAGTCTAATCGGGAATCTGCACGCAGANCCAGGTTACGGAAGCAG GCTGAATGTGATGAACTAGCTCAGCGTGCTGAAGCTTTGAAAGAAGAAAATEST: gi|21676139|gb|BQ628490.1|BQ628490
genomic: GGAAGCAGTCTAATCGGGAATCTGCACGCAGATCCAGGTTACGGAAGCAGgtgacagaga ... ttgttctcagGCTGAATGTGATGAACTAGCTCAGCGTGCTGAAGCTTTGAAAGAAGAAAAT
EST: GGAAGCAGTCTAATCGGGAATCTGCACGCAGATCCAGGTTACGGAAGCAG GCTGAATGTGATGAACTAGCTCAGCGTGCTGAAGCTTTGAAAGAAGAAAATEST: gi|51335529|gb|CO979395.1|CO979395
genomic: GGAAGCAGTCTAATCGGGAATCTGCACGCAGATCCAGGTTACGGAAGCAGgtgacagaga ... ttgttctcagGCTGAATGTGATGAACTAGCTCAGCGTGCTGAAGCTTTGAAAGAAGAAAAT
EST: GGAAGCAGTCTAATCGGGAATCTGCACGCAGATCCAGGTTACGGAAGCAG GCTGAATGTGATGAACTAGCTCAGCGTGCTGAAGCTTTGAAAGAAGAAAAT
genomic: GGAAGCAGTCTAATCGGGAATCTGCACGCAGATCCAGGTTACGGAAGCAGgtgacagaga ... ttgttctcagGCTGAATGTGATGAACTAGCTCAGCGTGCTGAAGCTTTGAAAGAAGAAAAT
gttgcaggtcataattgtcatattttaaatccctttttgtgcatgttgttctcagGCTGAATGTGATGAACTAGCTCAGCGTGCTGAAGCTTTGAAAGAAGAAAATGCCACTCTCCGATCAGAAGTGAGCCAGATCAGGAGTGAGTATGAGCAGC
ttgttctc CT-rich tract
tcataattgtcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacagagagtataacctttttcatacttctggttgcaggtcataattgtcatattttaaatccctttttgtgcatgttgttctcagGCTGAATGTGATGAACTAGCTCAGCGTGCTGAAGCTTTGAAAGAAGAAAATGCCACTCTCCGATCAGAAGTGAGCCAGATCAGGAGTGAGTATGAGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG