Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatcttctttaattttctgtattttcgctcctagtatgtttgggtggctttgtctcagtcttctccttttggttttgaatgattatgtaactattttttatctgtttgttagGTAAACACTGGATTAAATCCATGATTCTTACTGCTTCTCTGTTCCCATTCATGTGCTTTGGAATTGGATTTATCTTAAACACAATCGCTATATTCTATGG

Basic information

species Glycine max
transcript GLYMA08G13370.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 9
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaagaatcttctttaattttctgtattttcgctcctagtatgtttgggtggctttgtctcagtcttctccttttggttt--tgaatgattatgtaactattttttatct--gtttgtt-agGTAAACACTGGATTAAATCCATGATTCTTACTGCTTCTCTGTTCCCATTCATGTGCTTTGGAATTGGATTTATCTTAAACACAATCGCTATATTCTATGG
                                      |||||  |   | |  ||| |  |  | ||   | ||  |||  |   | | |||  || || |||  ||    |||| || ||||||||| ||||| || | |||| | || || |||||||| ||||| ||  ||||||| |||||||| ||| || |||||||||| || |||||||||||
--------------------------------------gtatgacttactcgacttggcggacccctccagtgttactttcctctctaactattcaagtaatttaaatgctggtttattcagGTAAACATTGGATCAAGTGCATGGTCCTCACGGCTTCTCTCTTCCCCTTTTTGTGCTTCGGAATTGGCTTTCTCCTAAACACAATTGCCATATTCTATGG

upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 3'ss of exon 9
----------------------------------------------------------gtaagaatcttctttaattttctgtattttcgctc--ctagtatgtttgggtggctttgtctcagtcttctccttt-tggttttgaatgatta--tgtaactattttttatctgtttgttagGTAAACACTGGATTAAATCCATGATTCTTACTGCTTCTCTGTTCCCATTCATGTGCTTTGGAATTGGATTTATCTTAAACACAATCGCTATATTCTATGG
                                                           |    ||||| | |  |||| |    ||    |   | ||||| | | | |   ||   ||||    |||   |  | | ||    || | |  | || |  || | | ||   |||| |||||||  ||||||||| || |||||||| ||||| || || || ||||| ||||||||||| ||||| ||  | || || ||||| ||||||||||||||
gtatgtacttcatccgtcaactggtcgatggctaagtttcttgtttttctgggcttccttccatatcttttgtgctttttttgggttatatttaacaagtatttcttgatatgttctactcaactgtctttgtgattgcttctggtgctaaattatatcacttctctgtcatcttgtcagGTAAAACCTGGATTAAGTCGATGATTCTCACTGCATCACTTTTTCCATTTATGTGCTTTGGGATTGGGTTCTTGTTGAATACAATTGCTATATTCTATGG

upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 9
----------------------------------------------------------------------gtaagaatcttctttaattttctgtattttcgctcctagtatgtt-tgggtggct-ttgtctcagtcttctc--cttttggttttgaatgattatgtaactattttttatctgtttgttagGTAAACACTGGATTAAATCCATGATTCTTACTGCTTCTCTGTTCCCATTCATGTGCTTTGGAATTGGATTTATCTTAAACACAATCGCTATATTCTATGG
                                                                      | | |     | ||| ||| | | |||| ||  |     | |  | |   |||   ||  ||| ||||| ||  | |||| ||     ||  | | | ||| |      |||  |||| |||||||  |||||| || || ||||| || ||||| || || ||||| || ||||||||||| ||||| || ||||| |||||||| ||||||||||||||
gtaagtaatttgtacattatgttgcctcactcttagtcttctgtcaccccctaaatttcatgtacgaaaggcatggcctgtttttgattcttt-tattgtcaatgaatctcttctataaatggtcatttcctctgtcttatcagcatttgtttactggtggct-tattactgt-----gtctacttgtcagGTAAAAGCTGGATAAAGTCAATGATACTCACTGCATCACTTTTCCCGTTTATGTGCTTTGGGATTGGTTTCATCTTGAACACAATTGCTATATTCTATGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295891|gb|FG992657.1|FG992657
EST:     GATGTACTCACGAAATGGGG                         GTAAACACTGGATTAAATCCATGATTCTTACTGCTTCTCTGTTCCCATTCA
genomic: GATGTACTCACGAAATGGGGgtaagaatct ... tgtttgttagGTAAACACTGGATTAAATCCATGATTCTTACTGCTTCTCTGTTCCCATTCA
EST: gi|208249123|gb|GE047168.1|GE047168
EST:     ATCTTTTATTTCTGGTTATGTGAGTGGGGGGATGTACTCACGAAATGGGG                         GTAAACACTGGATTAAATCCATGATTCTTACTGCTTCTCTGTTCCCATTCA
genomic: ATCTTTTATTTCTGGTTATGTGAGTGGGGGGATGTACTCACGAAATGGGGgtaagaatct ... tgtttgttagGTAAACACTGGATTAAATCCATGATTCTTACTGCTTCTCTGTTCCCATTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttctccttttggttttgaatgattatgtaactattttttatctgtttgttagGTAAACACTGGATTAAATCCATGATTCTTACTGCTTCTCTGTTCCCATTCATGTGCTTTGGAATTGGATTTATCTTAAACACAATCGCTATATTCTATGG
                           atgtaac  putative branch site (score: 3)
                                    ttttttatctgttt  putative PPT
               ttttgaatgattatgt  TA-rich tract