1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtattcattttctcgatcaccttcctgccttttggtcatttcttgatgtctaatgatttccactttcccttacagCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGAGG
species | Glycine max |
transcript | GLYMA07G00490.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAG CCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGACTGATTEST: gi|13788099|gb|BG650691.1|BG650691
genomic: TTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAGgtattcattt ... tcccttacagCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGACTGATT
EST: TTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAG CCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGACTGATTEST: gi|17964519|gb|BM271253.1|BM271253
genomic: TTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAGgtattcattt ... tcccttacagCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGACTGATT
EST: TTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAG CCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGACTGATT
genomic: TTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAGgtattcattt ... tcccttacagCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGACTGATT
cttcctgccttttggtcatttcttgatgtctaatgatttccactttcccttacagCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGAGG
gtctaat putative branch site (score: 3)
tttccactttccctta putative PPT
taatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcattttctcgatcaccttcctgccttttggtcatttcttgatgtctaatgatttccactttcccttacagCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA