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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgcatgagagttgaagagctatttcaggtgctgattctagttatatttggctcttttctgaaagaaacctaaattttgacagCTTTACGCAATATTGAATTGGCAAGCTTTCTTCGCTGGTATGTGGCTGTTGAACTTTATGATCCTGCATATGCCAAACGATTTTACTGCACTTACGAGAT

Basic information

species Glycine max
transcript GLYMA06G10090.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10090.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 9
----------------gtatgtgcatgagagttgaagagctatttcaggtgctgattctagttatatttg--gctcttttctgaaagaaaccta-aattttgacagCTTTACGCAATATTGAATTGGCAAGCTTTCTTCGCTGGTATGTGGCTGTTGAACTTTATGATCCTGCATATGCCAAACGATTTTACTGCACTTACGAGAT
                 || ||| || |   || ||| | |||        ||  |     |    ||||  | | |  ||| || | | |||  || ||| | ||| || |||||||| || ||||| |||||||| || ||||||||  | || |||||| |||||||||||||||| || || |||||||| || || |||||
gtatgcctactgcactctacgtgaataatttttcaagtggtataatttactctattctgcatccagtttgttggtatcatcttaatgcaccctttaaattttatagCATTGCGCAATATCGAGTTGGCTAGCTTTCTCCGTTGGTATGTTACCGTGGAACTTAATGATCCTGCATATGCAAAGCGTTTTTACTGTACCTATGAGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctgattctagttatatttggctcttttctgaaagaaacctaaattttgacagCTTTACGCAATATTGAATTGGCAAGCTTTCTTCGCTGGTATGTGGCTGTTGAACTTTATGATCCTGCATATGCCAAACGATTTTACTGCACTTACGAGAT
                                       acctaaa  putative branch site (score: 3)
      attctagttatattt  TA-rich tract